Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RN7SL633P-201ENST00000488974 297 ntBASIC2.84□□□□□ -1.95
COL4A3Q01955 RPS29P21-201ENST00000496272 170 ntBASIC2.84□□□□□ -1.95
COL4A3Q01955 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A3Q01955 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A3Q01955 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.84□□□□□ -1.95
COL4A3Q01955 MIR3674-201ENST00000636576 68 ntBASIC2.84□□□□□ -1.95
COL4A3Q01955 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A3Q01955 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC2.84□□□□□ -1.96
COL4A3Q01955 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A3Q01955 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A3Q01955 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.83□□□□□ -1.96
COL4A3Q01955 Y_RNA.497-201ENST00000384447 98 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 SNORA1.3-201ENST00000384676 136 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 Y_RNA.571-201ENST00000384753 98 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.83□□□□□ -1.96
COL4A3Q01955 AL161651.1-201ENST00000440882 223 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 AL645939.1-201ENST00000453429 797 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 AL441985.1-201ENST00000457727 251 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 AC140059.1-201ENST00000489238 361 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 RNU6-436P-201ENST00000516171 114 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.83□□□□□ -1.96
COL4A3Q01955 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.83□□□□□ -1.96
COL4A3Q01955 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL4A3Q01955 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL4A3Q01955 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
COL4A3Q01955 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.83□□□□□ -1.96
COL4A3Q01955 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 RNU6-529P-201ENST00000363383 104 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 RNU6-324P-201ENST00000363957 106 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 Y_RNA.329-201ENST00000365209 107 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 RNU6-19P-201ENST00000384718 107 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 MIR208B-201ENST00000401172 77 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 HMGN2P3-201ENST00000433603 273 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 HMGN2P5-201ENST00000436882 273 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 RPS29P6-201ENST00000438196 145 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 RPS20P10-201ENST00000451209 253 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AC091179.3-201ENST00000474761 144 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A3Q01955 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.82□□□□□ -1.96
COL4A3Q01955 MIR3609-201ENST00000582661 80 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AL008718.3-201ENST00000610217 321 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A3Q01955 AC004825.2-201ENST00000616634 455 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AC073308.1-201ENST00000623696 305 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A3Q01955 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A3Q01955 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.82□□□□□ -1.96
COL4A3Q01955 Y_RNA.338-201ENST00000365320 114 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 Y_RNA.357-201ENST00000365487 109 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A3Q01955 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AC096649.2-201ENST00000416186 393 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 CYCSP48-201ENST00000417124 323 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 BTF3P11-201ENST00000426582 477 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AC245517.4-201ENST00000448601 281 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A3Q01955 HSPE1P7-201ENST00000604681 321 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 RNU6-91P-201ENST00000607774 107 ntBASIC2.82□□□□□ -1.96
COL4A3Q01955 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC2.82□□□□□ -1.96
COL4A3Q01955 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A3Q01955 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.81□□□□□ -1.96
COL4A3Q01955 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A3Q01955 Y_RNA.637-201ENST00000459424 114 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 CKS1BP2-201ENST00000497342 240 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 RN7SKP43-201ENST00000516173 320 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 RNU6-62P-201ENST00000516526 102 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 RNU6-107P-201ENST00000516643 102 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 SNORD19.2-201ENST00000516978 73 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 PCGEM1.1-201ENST00000613431 131 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 MIR6076-201ENST00000617521 113 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 MTND1P7-201ENST00000632801 297 ntBASIC2.81□□□□□ -1.96
COL4A3Q01955 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A3Q01955 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.8□□□□□ -1.96
COL4A3Q01955 SNORD114-19-201ENST00000363072 75 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNU6-801P-201ENST00000364087 105 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 Y_RNA.400-201ENST00000383963 111 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNU6-959P-201ENST00000384671 107 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 HSPE1P26-201ENST00000405341 275 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNU2-2P-201ENST00000410396 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNU5E-9P-201ENST00000411164 104 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 NDUFS5P3-201ENST00000450668 321 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A3Q01955 AC107626.1-201ENST00000471084 183 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 AL049830.2-201ENST00000480072 201 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNA5SP282-201ENST00000516355 108 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A3Q01955 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.8□□□□□ -1.96
COL4A3Q01955 DEFB117-201ENST00000602356 141 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNU2-4P-201ENST00000606190 192 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.15-201ENST00000611544 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.16-201ENST00000613119 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.12-201ENST00000613778 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.9-201ENST00000615427 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.11-201ENST00000616345 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.2-201ENST00000616535 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.3-201ENST00000617785 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.19-201ENST00000618602 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 RNU2-1-201ENST00000618664 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.6-201ENST00000619225 191 ntBASIC2.8□□□□□ -1.96
COL4A3Q01955 U2.5-201ENST00000619465 191 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms