Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNORD116-28-201ENST00000516123 91 ntBASIC0.73□□□□□ -2.29
COL18A1P39060 FGF7P1-201ENST00000582820 288 ntBASIC0.73□□□□□ -2.29
COL18A1P39060 AC068790.2-201ENST00000602601 557 ntBASIC0.73□□□□□ -2.29
COL18A1P39060 AL360219.1-201ENST00000610230 366 ntBASIC0.73□□□□□ -2.29
COL18A1P39060 AC005562.2-201ENST00000618264 111 ntBASIC0.73□□□□□ -2.29
COL18A1P39060 AC137590.2-201ENST00000619709 240 ntBASIC0.73□□□□□ -2.29
COL18A1P39060 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.72□□□□□ -2.29
COL18A1P39060 RNU6-1123P-201ENST00000362347 106 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 RNU4-21P-201ENST00000362802 126 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 Y_RNA.167-201ENST00000363735 109 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 RNU6-248P-201ENST00000410720 107 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.72□□□□□ -2.29
COL18A1P39060 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.72□□□□□ -2.29
COL18A1P39060 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.72□□□□□ -2.29
COL18A1P39060 AC004386.2-201ENST00000441858 148 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 NFU1P2-201ENST00000448700 469 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 U8.21-201ENST00000459536 136 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC010493.1-201ENST00000513479 292 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.72□□□□□ -2.29
COL18A1P39060 RN7SKP287-201ENST00000516546 266 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 RNU1-142P-201ENST00000516682 145 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 SUMO2P16-201ENST00000519475 264 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AP001372.4-201ENST00000524889 472 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.72□□□□□ -2.29
COL18A1P39060 MIR3913-1-201ENST00000577744 102 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC087683.1-201ENST00000591187 441 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC093424.1-201ENST00000604999 338 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC024933.1-201ENST00000608472 348 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 AC067863.3-201ENST00000624172 122 ntBASIC0.72□□□□□ -2.29
COL18A1P39060 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
COL18A1P39060 snoU2-30.2-201ENST00000362805 70 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 RNU1-124P-201ENST00000363861 145 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 Y_RNA.201-201ENST00000364052 96 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 RNA5SP259-201ENST00000365541 109 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 RNU6-417P-201ENST00000384712 107 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 RNA5SP494-201ENST00000410653 129 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 TOMM22P2-201ENST00000430735 237 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 MTCO2P11-201ENST00000431069 680 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC0.71□□□□□ -2.3
COL18A1P39060 MTND1P27-201ENST00000451117 902 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 AC007215.1-201ENST00000464893 276 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 AC025465.4-201ENST00000513422 638 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 SNORA14.1-201ENST00000516113 141 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 RNU6-612P-201ENST00000516909 102 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.71□□□□□ -2.3
COL18A1P39060 HIF1AP1-201ENST00000553642 175 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 AL603755.1-201ENST00000619504 163 ntBASIC0.71□□□□□ -2.3
COL18A1P39060 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.71□□□□□ -2.3
COL18A1P39060 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.71□□□□□ -2.3
COL18A1P39060 RNU6-534P-201ENST00000364877 106 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 RNU6-996P-201ENST00000365438 107 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 SNORA25-201ENST00000384384 134 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 RNA5SP323-201ENST00000391094 133 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.7□□□□□ -2.3
COL18A1P39060 MTCO2P34-201ENST00000421994 607 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 AC016717.1-201ENST00000448918 286 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 RNU7-57P-201ENST00000459540 60 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 RNA5SP285-201ENST00000516619 119 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 SUB1P2-201ENST00000556401 297 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 MIR4636-201ENST00000582271 80 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 AC023932.2-201ENST00000603176 175 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 AP001596.2-201ENST00000608410 312 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 AC040896.1-201ENST00000613819 479 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 MTND4P5-201ENST00000435821 1374 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 RNU6-82P-201ENST00000363970 107 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
COL18A1P39060 RPS26P42-201ENST00000413485 326 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.7□□□□□ -2.3
COL18A1P39060 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.7□□□□□ -2.3
COL18A1P39060 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.7□□□□□ -2.3
COL18A1P39060 RPS29P27-201ENST00000463711 170 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 MTCO3P38-201ENST00000468910 766 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.7□□□□□ -2.3
COL18A1P39060 RNU6-415P-201ENST00000516252 97 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 MTCO2P4-201ENST00000517968 247 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 AC068792.1-201ENST00000621354 417 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 MIR6759-201ENST00000638110 65 ntBASIC0.7□□□□□ -2.3
COL18A1P39060 RNU5B-2P-201ENST00000363036 113 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 MIR586-201ENST00000385035 97 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
COL18A1P39060 RNA5SP467-201ENST00000391274 118 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 SNORA26.8-201ENST00000391306 124 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 AL606923.1-201ENST00000406616 190 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 AC009237.7-201ENST00000447357 229 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 HSPE1P13-201ENST00000451143 297 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.69□□□□□ -2.3
COL18A1P39060 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.69□□□□□ -2.3
COL18A1P39060 BX284668.6-201ENST00000606899 438 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 AL354950.2-201ENST00000617939 290 ntBASIC0.69□□□□□ -2.3
COL18A1P39060 HSBP1P2-201ENST00000299671 229 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 RNU6-1305P-201ENST00000364353 104 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 RNU6-1240P-201ENST00000365155 104 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 SNORA4.2-201ENST00000365313 147 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 SNORD73A-201ENST00000386062 65 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.68□□□□□ -2.3
COL18A1P39060 RNU7-63P-201ENST00000459054 62 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 AL133373.1-201ENST00000497098 94 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 SNORA70.22-201ENST00000517160 124 ntBASIC0.68□□□□□ -2.3
COL18A1P39060 MTND1P24-201ENST00000552175 861 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms