Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU7-143P-201ENST00000516781 65 ntBASIC3.74□□□□□ -1.81
MSX1P28360 RNU6-365P-201ENST00000517113 106 ntBASIC3.74□□□□□ -1.81
MSX1P28360 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
MSX1P28360 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.74□□□□□ -1.81
MSX1P28360 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSX1P28360 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.73□□□□□ -1.81
MSX1P28360 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
MSX1P28360 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.73□□□□□ -1.81
MSX1P28360 LINC02471-203ENST00000641941 4752 ntBASIC3.73□□□□□ -1.81
MSX1P28360 AC016588.2-201ENST00000632484 3021 ntBASIC3.73□□□□□ -1.81
MSX1P28360 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSX1P28360 RNU6-640P-201ENST00000363693 105 ntBASIC3.73□□□□□ -1.81
MSX1P28360 RNU6-294P-201ENST00000364999 102 ntBASIC3.73□□□□□ -1.81
MSX1P28360 RNU6-1235P-201ENST00000384559 107 ntBASIC3.73□□□□□ -1.81
MSX1P28360 SNORD12C-201ENST00000386307 89 ntBASIC3.73□□□□□ -1.81
MSX1P28360 HSPE1P26-201ENST00000405341 275 ntBASIC3.73□□□□□ -1.81
MSX1P28360 AL159169.1-201ENST00000421119 127 ntBASIC3.73□□□□□ -1.81
MSX1P28360 Z98742.2-201ENST00000431564 187 ntBASIC3.73□□□□□ -1.81
MSX1P28360 HMGN2P31-201ENST00000432430 273 ntBASIC3.73□□□□□ -1.81
MSX1P28360 RPS29P7-201ENST00000439662 171 ntBASIC3.73□□□□□ -1.81
MSX1P28360 RNU6-498P-201ENST00000459468 107 ntBASIC3.73□□□□□ -1.81
MSX1P28360 ATP5EP1-201ENST00000510257 156 ntBASIC3.73□□□□□ -1.81
MSX1P28360 PRELID2P1-201ENST00000552837 301 ntBASIC3.73□□□□□ -1.81
MSX1P28360 AC025627.2-201ENST00000576220 160 ntBASIC3.73□□□□□ -1.81
MSX1P28360 MIR5684-201ENST00000585074 65 ntBASIC3.73□□□□□ -1.81
MSX1P28360 AP001318.4-201ENST00000616637 121 ntBASIC3.73□□□□□ -1.81
MSX1P28360 MIR7151-201ENST00000617477 60 ntBASIC3.73□□□□□ -1.81
MSX1P28360 AC002064.3-201ENST00000623448 346 ntBASIC3.73□□□□□ -1.81
MSX1P28360 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.73□□□□□ -1.81
MSX1P28360 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSX1P28360 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSX1P28360 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.72□□□□□ -1.81
MSX1P28360 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSX1P28360 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
MSX1P28360 AL161912.2-201ENST00000565707 3007 ntBASIC3.72□□□□□ -1.81
MSX1P28360 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSX1P28360 MAPK10-373ENST00000641983 6772 ntBASIC3.72□□□□□ -1.81
MSX1P28360 RNU6-1240P-201ENST00000365155 104 ntBASIC3.72□□□□□ -1.81
MSX1P28360 Y_RNA.328-201ENST00000365208 113 ntBASIC3.72□□□□□ -1.81
MSX1P28360 RNU6-756P-201ENST00000383997 107 ntBASIC3.72□□□□□ -1.81
MSX1P28360 HMGN2P8-201ENST00000391458 268 ntBASIC3.72□□□□□ -1.81
MSX1P28360 MIR1251-201ENST00000408552 70 ntBASIC3.72□□□□□ -1.81
MSX1P28360 RNA5SP136-201ENST00000410906 107 ntBASIC3.72□□□□□ -1.81
MSX1P28360 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.72□□□□□ -1.81
MSX1P28360 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.72□□□□□ -1.81
MSX1P28360 RNA5SP236-201ENST00000516169 116 ntBASIC3.72□□□□□ -1.81
MSX1P28360 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.72□□□□□ -1.81
MSX1P28360 AC012531.5-201ENST00000611375 151 ntBASIC3.72□□□□□ -1.81
MSX1P28360 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSX1P28360 AC009831.4-201ENST00000620744 325 ntBASIC3.72□□□□□ -1.81
MSX1P28360 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
MSX1P28360 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.71□□□□□ -1.82
MSX1P28360 AP003122.5-201ENST00000527668 3766 ntBASIC3.71□□□□□ -1.82
MSX1P28360 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSX1P28360 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.71□□□□□ -1.82
MSX1P28360 RNU1-22P-201ENST00000363334 158 ntBASIC3.71□□□□□ -1.82
MSX1P28360 SNORD35B-201ENST00000363660 87 ntBASIC3.71□□□□□ -1.82
MSX1P28360 Y_RNA.163-201ENST00000363702 113 ntBASIC3.71□□□□□ -1.82
MSX1P28360 MIR570-201ENST00000384917 97 ntBASIC3.71□□□□□ -1.82
MSX1P28360 AC016909.1-201ENST00000415916 166 ntBASIC3.71□□□□□ -1.82
MSX1P28360 AC002075.2-201ENST00000425207 252 ntBASIC3.71□□□□□ -1.82
MSX1P28360 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.71□□□□□ -1.82
MSX1P28360 RNU6-504P-201ENST00000516568 104 ntBASIC3.71□□□□□ -1.82
MSX1P28360 AC011604.1-201ENST00000545978 196 ntBASIC3.71□□□□□ -1.82
MSX1P28360 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.71□□□□□ -1.82
MSX1P28360 MIR3944-201ENST00000581277 108 ntBASIC3.71□□□□□ -1.82
MSX1P28360 MIR3117-201ENST00000584034 78 ntBASIC3.71□□□□□ -1.82
MSX1P28360 AC008739.3-201ENST00000603262 127 ntBASIC3.71□□□□□ -1.82
MSX1P28360 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.71□□□□□ -1.82
MSX1P28360 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSX1P28360 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.71□□□□□ -1.82
MSX1P28360 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
MSX1P28360 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.71□□□□□ -1.82
MSX1P28360 FAM35DP-201ENST00000323387 2712 ntBASIC3.71□□□□□ -1.82
MSX1P28360 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX1P28360 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.7□□□□□ -1.82
MSX1P28360 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.7□□□□□ -1.82
MSX1P28360 Y_RNA.333-201ENST00000365274 102 ntBASIC3.7□□□□□ -1.82
MSX1P28360 MIR200C-201ENST00000384980 68 ntBASIC3.7□□□□□ -1.82
MSX1P28360 MIR1302-5-201ENST00000408164 150 ntBASIC3.7□□□□□ -1.82
MSX1P28360 SNORA3C-201ENST00000408792 125 ntBASIC3.7□□□□□ -1.82
MSX1P28360 RNA5SP38-201ENST00000410750 119 ntBASIC3.7□□□□□ -1.82
MSX1P28360 RNY4P29-201ENST00000410801 97 ntBASIC3.7□□□□□ -1.82
MSX1P28360 CALM2P4-201ENST00000430810 426 ntBASIC3.7□□□□□ -1.82
MSX1P28360 AC018634.1-201ENST00000437554 401 ntBASIC3.7□□□□□ -1.82
MSX1P28360 HMGN2P32-201ENST00000444648 269 ntBASIC3.7□□□□□ -1.82
MSX1P28360 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX1P28360 RNU6-113P-201ENST00000516653 101 ntBASIC3.7□□□□□ -1.82
MSX1P28360 MIR3129-201ENST00000581095 76 ntBASIC3.7□□□□□ -1.82
MSX1P28360 AC013412.1-201ENST00000610687 192 ntBASIC3.7□□□□□ -1.82
MSX1P28360 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.7□□□□□ -1.82
MSX1P28360 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
MSX1P28360 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX1P28360 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.7□□□□□ -1.82
MSX1P28360 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX1P28360 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSX1P28360 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.69□□□□□ -1.82
MSX1P28360 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.69□□□□□ -1.82
MSX1P28360 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSX1P28360 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 183 ms