Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC007283.2-201ENST00000424739 197 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC-1.1□□□□□ -2.59
HMGA1P17096 AC092427.1-201ENST00000439177 601 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 AC007000.2-201ENST00000442564 487 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 RPS23P5-201ENST00000495419 428 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-1.1□□□□□ -2.59
HMGA1P17096 RNU2-60P-201ENST00000517290 128 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 DEFB130C-202ENST00000530001 230 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 AC138869.1-201ENST00000568623 124 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 AC078795.3-201ENST00000602913 472 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 SNORA28-201ENST00000606769 126 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-1.1□□□□□ -2.59
HMGA1P17096 AC104260.1-201ENST00000616660 539 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 MIR409-201ENST00000362237 79 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-1.11□□□□□ -2.59
HMGA1P17096 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-1.11□□□□□ -2.59
HMGA1P17096 AC091885.1-201ENST00000506658 268 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 Y_RNA.687-201ENST00000516558 91 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 RNU1-142P-201ENST00000516682 145 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 RNU6-1315P-201ENST00000517187 99 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-1.11□□□□□ -2.59
HMGA1P17096 DEFB131D-201ENST00000526803 184 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 DEFB131C-201ENST00000528817 165 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 AC023050.3-201ENST00000541142 333 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC-1.11□□□□□ -2.59
HMGA1P17096 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-1.11□□□□□ -2.59
HMGA1P17096 AL117336.2-201ENST00000602435 335 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 MIR7107-201ENST00000611489 80 ntBASIC-1.11□□□□□ -2.59
HMGA1P17096 Y_RNA.136-201ENST00000363444 102 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 MIR526A1-201ENST00000384897 85 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 MIR1253-201ENST00000408273 105 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 ZNF736P5Y-201ENST00000451173 805 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 RNU7-12P-201ENST00000516030 62 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 MIR4771-2-201ENST00000577758 74 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 MIR4771-1-201ENST00000582617 74 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 MIR6514-201ENST00000622549 70 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 FER-210ENST00000628534 558 ntTSL 5 BASIC-1.12□□□□□ -2.59
HMGA1P17096 MIR1322-201ENST00000638013 71 ntBASIC-1.12□□□□□ -2.59
HMGA1P17096 Y_RNA.33-201ENST00000362591 102 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 RNU6-142P-201ENST00000384019 107 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 RNU6-701P-201ENST00000384059 107 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 RNU6-24P-201ENST00000384440 107 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 MIR10A-201ENST00000385043 110 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 SNORD100-201ENST00000408573 76 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC-1.13□□□□□ -2.59
HMGA1P17096 USP9YP28-201ENST00000435142 589 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 EEF1E1P1-201ENST00000446998 430 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 AC010468.3-201ENST00000508225 458 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 MTCO3P27-201ENST00000514397 196 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC-1.13□□□□□ -2.59
HMGA1P17096 SNORA43.2-201ENST00000516652 128 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 MIR4804-201ENST00000581683 73 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 Z99497.2-201ENST00000603634 310 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 AC064872.1-201ENST00000604823 1072 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 AL590491.3-201ENST00000610731 82 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 AL442067.1-201ENST00000613261 223 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 MIR4320-201ENST00000636981 65 ntBASIC-1.13□□□□□ -2.59
HMGA1P17096 RNU6-424P-201ENST00000384367 105 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 MIR563-201ENST00000385080 79 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 AC106883.1-201ENST00000418805 562 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 MTCYBP39-201ENST00000437562 491 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-1.14□□□□□ -2.59
HMGA1P17096 MTCO3P17-201ENST00000443775 513 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 AC113347.3-201ENST00000509113 148 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 RNU6-180P-201ENST00000516697 61 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-1.14□□□□□ -2.59
HMGA1P17096 AC026616.1-201ENST00000523157 525 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC-1.14□□□□□ -2.59
HMGA1P17096 MIR4752-201ENST00000579672 72 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 U6.108-201ENST00000637764 58 ntBASIC-1.14□□□□□ -2.59
HMGA1P17096 AC106754.1-201ENST00000562632 1513 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 RNU4-32P-201ENST00000363404 141 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 Y_RNA.439-201ENST00000384119 94 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 MTCYBP2-201ENST00000407745 171 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 MLLT10P1-201ENST00000418346 262 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-1.15□□□□□ -2.59
HMGA1P17096 USP9YP11-201ENST00000427537 717 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-1.15□□□□□ -2.59
HMGA1P17096 AC007327.1-201ENST00000447461 264 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-1.15□□□□□ -2.59
HMGA1P17096 RNA5SP470-201ENST00000516463 106 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 SNORA27.4-201ENST00000516650 95 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC-1.15□□□□□ -2.59
HMGA1P17096 AP003168.1-201ENST00000530091 307 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 AC022960.3-201ENST00000619794 441 ntBASIC-1.15□□□□□ -2.59
HMGA1P17096 RNU4-56P-201ENST00000364700 142 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 MIR7-1-201ENST00000384871 110 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 RNU6-817P-201ENST00000391083 104 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 RNA5SP266-201ENST00000410273 108 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 Y_RNA.623-201ENST00000411128 95 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-1.16□□□□□ -2.6
HMGA1P17096 RNU6-504P-201ENST00000516568 104 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 RNU6-63P-201ENST00000516690 95 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 AC105029.1-201ENST00000520250 669 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-1.16□□□□□ -2.6
HMGA1P17096 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-1.16□□□□□ -2.6
HMGA1P17096 RNU1-76P-201ENST00000362903 159 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 RNA5SP192-201ENST00000364404 120 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 MIR549A-201ENST00000385268 96 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms