Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.29□□□□□ -1.88
COL6A1P12109 BMS1P22-201ENST00000414726 313 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 PTGES3P4-201ENST00000426243 356 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.29□□□□□ -1.88
COL6A1P12109 MRPS10P1-201ENST00000448483 130 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.29□□□□□ -1.88
COL6A1P12109 RNU6-625P-201ENST00000459412 107 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 AC010401.1-201ENST00000463867 348 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 RNU6-1278P-201ENST00000516130 107 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 AP005660.1-201ENST00000522972 293 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 AC105137.2-201ENST00000569073 466 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 AC022441.3-201ENST00000605737 136 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
COL6A1P12109 MTND5P35-201ENST00000557537 1720 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.29□□□□□ -1.88
COL6A1P12109 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A1P12109 RNU6-47P-201ENST00000383866 107 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 RNU6-187P-201ENST00000384139 106 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 RNU6-793P-201ENST00000384233 104 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 Y_RNA.498-201ENST00000384460 102 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 SNORA67.4-201ENST00000384688 142 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 RNU6-651P-201ENST00000411040 105 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.28□□□□□ -1.88
COL6A1P12109 AL513328.1-201ENST00000446460 224 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 HMGN1P18-201ENST00000457642 277 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 AC007215.1-201ENST00000464893 276 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 AC090525.1-201ENST00000479116 478 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.28□□□□□ -1.88
COL6A1P12109 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.28□□□□□ -1.88
COL6A1P12109 RPL21P9-201ENST00000556149 474 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.28□□□□□ -1.88
COL6A1P12109 CYP4A27P-201ENST00000567218 190 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 AL391813.1-201ENST00000603098 260 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 AL357075.2-201ENST00000614906 189 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.28□□□□□ -1.88
COL6A1P12109 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.28□□□□□ -1.88
COL6A1P12109 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
COL6A1P12109 BX322639.1-202ENST00000423987 2213 ntBASIC3.28□□□□□ -1.88
COL6A1P12109 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.89
COL6A1P12109 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.89
COL6A1P12109 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A1P12109 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A1P12109 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A1P12109 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A1P12109 RNU1-75P-201ENST00000347264 129 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 RNU6-1310P-201ENST00000384153 107 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 Y_RNA.506-201ENST00000384494 102 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 RPL23AP3-201ENST00000453844 468 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A1P12109 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.27□□□□□ -1.89
COL6A1P12109 SNORA31.16-201ENST00000516773 139 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A1P12109 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.27□□□□□ -1.89
COL6A1P12109 AC018448.1-201ENST00000552843 316 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 AC090616.3-201ENST00000582184 217 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 MIR4769-201ENST00000584126 77 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 AL078605.1-201ENST00000603529 500 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 AL356280.1-201ENST00000603614 379 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 AC011921.3-201ENST00000605540 361 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 U6.106-201ENST00000636360 105 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 SNORD98-201ENST00000636377 67 ntBASIC3.27□□□□□ -1.89
COL6A1P12109 Y_RNA.233-201ENST00000364407 101 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 U8.9-201ENST00000365667 134 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 RNU1-109P-201ENST00000383960 147 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 RNU6-125P-201ENST00000384505 107 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 MIR196B-201ENST00000384852 84 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 RNU6-493P-201ENST00000391321 108 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 MIR208B-201ENST00000401172 77 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 Y_RNA.597-201ENST00000410463 100 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 RNU6-1140P-201ENST00000410517 106 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 CYCSP48-201ENST00000417124 323 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A1P12109 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A1P12109 SNORD2.1-201ENST00000458762 69 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 AP001324.2-201ENST00000461163 319 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 AIG1P1-201ENST00000503376 148 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 RNA5SP385-201ENST00000515947 110 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 AC109329.2-201ENST00000519658 482 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.26□□□□□ -1.89
COL6A1P12109 AC007536.1-201ENST00000533382 349 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 MIR4765-201ENST00000585007 77 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 SNRPGP20-201ENST00000604477 205 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A1P12109 MIR7157-201ENST00000635801 60 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 AC092593.1-201ENST00000515413 1815 ntBASIC3.26□□□□□ -1.89
COL6A1P12109 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
COL6A1P12109 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.25□□□□□ -1.89
COL6A1P12109 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.25□□□□□ -1.89
COL6A1P12109 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.25□□□□□ -1.89
COL6A1P12109 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.25□□□□□ -1.89
COL6A1P12109 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A1P12109 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A1P12109 SNORA38-201ENST00000363946 132 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 RNU6-748P-201ENST00000384648 107 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A1P12109 RAB28P5-201ENST00000427490 651 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 RPS12P18-201ENST00000442381 270 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 AC074198.2-201ENST00000508153 258 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms