Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 DEFB131C-201ENST00000528817 165 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 MIR4432-201ENST00000581823 84 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC006504.8-201ENST00000621046 635 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 RNU6-848P-201ENST00000515948 107 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 RNU6-617P-201ENST00000516147 107 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 RNU6-473P-201ENST00000516164 107 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 RNU6-1232P-201ENST00000516299 86 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 RNU6-1049P-201ENST00000516414 107 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 AP002453.2-201ENST00000533503 320 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 AC023050.3-201ENST00000541142 333 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 MIR4804-201ENST00000581683 73 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 AC012433.1-201ENST00000588916 398 ntBASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 FER-210ENST00000628534 558 ntTSL 5 BASIC-1.06□□□□□ -2.58
CCDC88BA6NC98 RNU6-819P-201ENST00000364116 107 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 RNA5SP117-201ENST00000365294 118 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 SNORD100-201ENST00000408573 76 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 AC079354.2-201ENST00000453523 154 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 AC006026.2-201ENST00000457376 180 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 U8.21-201ENST00000459536 136 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 SNRPGP7-201ENST00000469016 106 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 MTCO3P27-201ENST00000514397 196 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 RN7SKP164-201ENST00000516138 266 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 MRPS36P4-201ENST00000534436 298 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 AC087883.1-201ENST00000551882 391 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 NAMPTP3-201ENST00000569273 224 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 U6.108-201ENST00000637764 58 ntBASIC-1.07□□□□□ -2.58
CCDC88BA6NC98 SNORD114-14-201ENST00000362723 75 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 RNU6-1285P-201ENST00000363480 105 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 MTCYBP2-201ENST00000407745 171 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 AC007969.2-201ENST00000441891 191 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 RNU6-1037P-201ENST00000459571 107 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 RNU6-567P-201ENST00000516746 107 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 MIR4436A-201ENST00000585278 85 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 SNORA28-201ENST00000606769 126 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-1.08□□□□□ -2.58
CCDC88BA6NC98 RNU6-78P-201ENST00000362897 107 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AL354692.1-201ENST00000423044 315 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 MTCO1P20-201ENST00000425366 358 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AC015818.7-201ENST00000428754 109 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AL627311.1-201ENST00000431514 115 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AC087499.7-201ENST00000441958 109 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AC007000.2-201ENST00000442564 487 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 Y_RNA.687-201ENST00000516558 91 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 MIR3923-201ENST00000579521 83 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 AL117336.2-201ENST00000602435 335 ntBASIC-1.09□□□□□ -2.58
CCDC88BA6NC98 SNORD114-11-201ENST00000363738 75 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 SNORD114-3-201ENST00000364969 75 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 RNU6-424P-201ENST00000384367 105 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 MIR217-201ENST00000384817 110 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 MIR520C-201ENST00000385005 87 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 MIR10A-201ENST00000385043 110 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 AC010468.3-201ENST00000508225 458 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 RNU7-41P-201ENST00000515917 61 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 AC100830.2-201ENST00000581636 240 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 AC106754.1-201ENST00000562632 1513 ntBASIC-1.1□□□□□ -2.59
CCDC88BA6NC98 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 RNU6-527P-201ENST00000363425 104 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 RNU4-56P-201ENST00000364700 142 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 MIR196A1-201ENST00000388006 70 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 USP9YP29-201ENST00000445112 563 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 RNU6-953P-201ENST00000459154 107 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 LRRC34P1-201ENST00000542742 915 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AL133153.1-201ENST00000557756 303 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AL442067.1-201ENST00000613261 223 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AC104260.1-201ENST00000616660 539 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 AL357080.1-201ENST00000617394 239 ntBASIC-1.11□□□□□ -2.59
CCDC88BA6NC98 Y_RNA.100-201ENST00000363141 102 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 SNORD83B-201ENST00000386745 93 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 RNU6-1186P-201ENST00000410429 97 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 USP9YP28-201ENST00000435142 589 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 MTCYBP39-201ENST00000437562 491 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC007327.1-201ENST00000447461 264 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 ZNF736P5Y-201ENST00000451173 805 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 RNU2-34P-201ENST00000516534 121 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 SNORA27.4-201ENST00000516650 95 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC133485.4-201ENST00000561835 220 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC090517.1-201ENST00000569307 266 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC004584.2-201ENST00000570407 410 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AL391840.1-201ENST00000571144 367 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC064872.1-201ENST00000604823 1072 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC090186.1-201ENST00000605991 572 ntBASIC-1.12□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms