Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 Y_RNA.72-201ENST00000362894 103 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 RNU6-541P-201ENST00000384709 110 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 U3.40-201ENST00000408706 208 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AC074085.1-201ENST00000413598 418 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AL353689.1-201ENST00000438895 199 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AC004386.2-201ENST00000441858 148 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AC046134.1-201ENST00000514454 666 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AP003033.1-201ENST00000527244 415 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 AC104581.2-201ENST00000572227 430 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 MIR4790-201ENST00000577799 79 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 SDR42E1P4-201ENST00000620894 481 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 SCARNA4-201ENST00000629045 128 ntBASIC3.16□□□□□ -1.9
SHROOM4Q9ULL8 BX322639.1-202ENST00000423987 2213 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 MTND4P5-201ENST00000435821 1374 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 MIR32-201ENST00000384965 70 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 AC079354.2-201ENST00000453523 154 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 AC060780.3-201ENST00000589464 80 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 AC243960.4-201ENST00000600532 288 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 AC022709.1-201ENST00000615967 87 ntBASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SHROOM4Q9ULL8 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 RNU6-545P-201ENST00000362681 104 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 SNORD48-201ENST00000364953 64 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 AC139712.2-201ENST00000424302 339 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 MTCO3P46-201ENST00000425787 232 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 MTND1P17-201ENST00000448961 204 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC3.14□□□□□ -1.91
SHROOM4Q9ULL8 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 CBX3P1-201ENST00000325243 554 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 AC016925.1-201ENST00000458303 298 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 RPL31P58-201ENST00000469001 379 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 RNU7-175P-201ENST00000515915 61 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 AL161670.1-201ENST00000554348 137 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 AC084782.3-201ENST00000612282 578 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SHROOM4Q9ULL8 RNU6-137P-201ENST00000363680 108 ntBASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 Y_RNA.354-201ENST00000365448 111 ntBASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 RNU6-306P-201ENST00000384617 107 ntBASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 MIR4742-201ENST00000581069 85 ntBASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 MIR4753-201ENST00000585119 83 ntBASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SHROOM4Q9ULL8 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 SNORD115-32-201ENST00000364079 82 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 RNU6-53P-201ENST00000365367 106 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 MIR153-2-201ENST00000385225 87 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 RNA5SP489-201ENST00000410986 109 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 SNORD5.1-201ENST00000458800 75 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 MRPS17P9-201ENST00000511924 393 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 AL627230.6-201ENST00000611129 280 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 AL590240.4-201ENST00000616908 390 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 CASC19-280ENST00000642102 1351 ntBASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
SHROOM4Q9ULL8 RNA5SP325-201ENST00000363756 130 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 Y_RNA.248-201ENST00000364501 109 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 MIR597-201ENST00000384968 97 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 SNORA12.2-201ENST00000391040 156 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 RNU6-174P-201ENST00000410406 106 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 MTCO3P8-201ENST00000453691 755 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 RNA5SP57-201ENST00000459463 123 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 FO393415.2-201ENST00000480085 343 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 RNU6-948P-201ENST00000516374 107 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 RRN3P3-201ENST00000549207 578 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 MIR3169-201ENST00000578032 83 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 AC005786.1-201ENST00000588553 154 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 AL109918.3-201ENST00000603072 338 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 ZNF204P-201ENST00000416749 2397 ntBASIC3.1□□□□□ -1.91
SHROOM4Q9ULL8 RNU4-13P-201ENST00000364019 141 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 AL033519.2-201ENST00000403958 392 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 AL356432.1-201ENST00000405809 419 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 MIR1283-1-201ENST00000408494 87 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 AL356379.1-201ENST00000414105 126 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 RPL30P16-201ENST00000419341 429 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms