Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR1283-1-201ENST00000408494 87 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 AC139712.2-201ENST00000424302 339 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 AL445305.1-201ENST00000432577 575 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 MTCYBP6-201ENST00000441810 138 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.639-201ENST00000458981 102 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 AP000870.1-201ENST00000472927 406 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 AC027575.1-201ENST00000481064 460 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 MIR4719-201ENST00000585233 84 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.783-201ENST00000613546 102 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 AL590240.4-201ENST00000616908 390 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AL596028.1-201ENST00000326971 197 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 MIR449A-201ENST00000362113 91 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 MIR369-201ENST00000362155 70 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNU6-1115P-201ENST00000362490 106 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNU6-23P-201ENST00000363283 107 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNU6-873P-201ENST00000363833 107 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 SNORD114-6-201ENST00000364393 72 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.431-201ENST00000384086 102 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNU4-52P-201ENST00000384209 138 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 MIR597-201ENST00000384968 97 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 MIR559-201ENST00000385188 96 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNU6-700P-201ENST00000391043 107 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNU6-159P-201ENST00000391080 106 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AL355497.1-201ENST00000406262 551 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 HMGN2P38-201ENST00000423806 265 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RPL23AP50-201ENST00000434149 455 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AC007395.1-201ENST00000451333 677 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 UBE2DNL-203ENST00000474922 222 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AP005660.1-201ENST00000522972 293 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RRN3P3-201ENST00000549207 578 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 UBL5P4-201ENST00000562584 236 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AC080078.3-201ENST00000605407 463 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 AL080274.1-201ENST00000605565 220 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.17□□□□□ -2.06
LIMA1Q9UHB6 RNA5SP493-201ENST00000364115 91 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.395-201ENST00000383945 109 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU6-1040P-201ENST00000383974 107 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU6-474P-201ENST00000384243 107 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.500-201ENST00000384466 111 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 SNORA64-201ENST00000384674 134 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU11-3P-201ENST00000391111 133 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU2-2P-201ENST00000410396 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 HMGN2P3-201ENST00000433603 273 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 HMGN2P5-201ENST00000436882 273 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU1-131P-201ENST00000458943 161 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 MIR2053-201ENST00000459295 91 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 AC010531.2-201ENST00000465012 153 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 SNORA25.14-201ENST00000516481 132 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU6-344P-201ENST00000516635 111 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 MIR4753-201ENST00000585119 83 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.15-201ENST00000611544 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.16-201ENST00000613119 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.12-201ENST00000613778 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.20-201ENST00000613956 192 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.9-201ENST00000615427 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.11-201ENST00000616345 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.2-201ENST00000616535 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.3-201ENST00000617785 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.19-201ENST00000618602 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 RNU2-1-201ENST00000618664 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.6-201ENST00000619225 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.5-201ENST00000619465 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 U2.10-201ENST00000620268 191 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 MIR6873-201ENST00000622788 63 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 AC099654.10-201ENST00000640395 161 ntBASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMA1Q9UHB6 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 RNU6-222P-201ENST00000362438 107 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 RNU6-280P-201ENST00000364145 104 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 SNORA67.3-201ENST00000384366 140 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 MIR190B-201ENST00000401119 79 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 RNA5SP489-201ENST00000410986 109 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 MTCYBP10-201ENST00000424905 650 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 AL356320.1-201ENST00000429616 163 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 USP9YP16-201ENST00000430287 407 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 MTCO1P44-201ENST00000441935 243 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 USP9YP23-201ENST00000455085 407 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 AC020661.2-201ENST00000560114 134 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 MIR3169-201ENST00000578032 83 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 MIR4448-201ENST00000584360 86 ntBASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LIMA1Q9UHB6 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms