Protein–RNA interactions for Protein: Q9NZQ3

NCKIPSD, NCK-interacting protein with SH3 domain, humanhuman

Predictions only

Length 722 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSDQ9NZQ3 RNA5SP240-201ENST00000365355 128 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 Y_RNA.396-201ENST00000383949 103 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 Y_RNA.461-201ENST00000384263 103 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 RNU6-611P-201ENST00000384276 104 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 SNORA67.4-201ENST00000384688 142 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 MIR27B-201ENST00000385129 97 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 RPPH1-2P-201ENST00000516688 293 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 SNORA40.15-201ENST00000516884 107 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 MIR2355-201ENST00000517199 87 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AC034114.1-201ENST00000520293 285 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AL442163.3-201ENST00000554110 156 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AC023824.2-201ENST00000566185 400 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AC090617.3-201ENST00000573670 475 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AL034555.1-201ENST00000604816 211 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AL138963.2-201ENST00000605137 226 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AC011373.1-201ENST00000607270 237 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 AL137847.3-201ENST00000611521 109 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.54□□□□□ -2
NCKIPSDQ9NZQ3 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RNU1-76P-201ENST00000362903 159 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RNU6-770P-201ENST00000363929 105 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 Y_RNA.257-201ENST00000364596 102 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RNU6-806P-201ENST00000365147 105 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 Y_RNA.350-201ENST00000365409 98 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RNU6-472P-201ENST00000384299 107 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 ELOCP20-201ENST00000422460 345 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AL445305.1-201ENST00000432577 575 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AL121890.1-201ENST00000435457 205 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RPEP5-201ENST00000441137 268 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 HMGB1P35-201ENST00000503360 598 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC008413.1-201ENST00000511864 177 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RNU6-397P-201ENST00000516226 104 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 RNU6-586P-201ENST00000517265 104 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC109329.2-201ENST00000519658 482 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC023157.2-201ENST00000540596 141 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC021231.3-201ENST00000558497 370 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 UBL5P4-201ENST00000562584 236 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 SNORD53-201ENST00000579969 78 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AC005357.1-201ENST00000588399 301 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AL713866.2-201ENST00000603579 219 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 U6.92-201ENST00000636464 89 ntBASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
NCKIPSDQ9NZQ3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.27-201ENST00000362540 103 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU6-1301P-201ENST00000362724 104 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.105-201ENST00000363182 111 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNA5SP125-201ENST00000364843 120 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.447-201ENST00000384184 113 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU6-318P-201ENST00000384283 103 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.471-201ENST00000384312 102 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.552-201ENST00000384665 112 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 MIR29B2-201ENST00000385055 81 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 MIR153-2-201ENST00000385225 87 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU1-139P-201ENST00000391307 165 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 EIF1P2-201ENST00000428233 350 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 AL161788.1-201ENST00000441805 169 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 SNORD127-201ENST00000458892 86 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU7-26P-201ENST00000458980 63 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU6-1132P-201ENST00000459214 107 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU6-388P-201ENST00000517012 105 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.713-201ENST00000517013 96 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU6-389P-201ENST00000517048 105 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 AL355297.2-201ENST00000604792 129 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 MIR6715A-201ENST00000615929 79 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 AC130454.1-201ENST00000622948 401 ntBASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
NCKIPSDQ9NZQ3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.19-201ENST00000362462 99 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 RNA5SP361-201ENST00000362686 118 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.183-201ENST00000363882 113 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.222-201ENST00000364264 102 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 Y_RNA.319-201ENST00000365138 92 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 RNY3P4-201ENST00000384428 101 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 MIR10B-201ENST00000385011 110 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 MIR549A-201ENST00000385268 96 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 AC012306.1-201ENST00000423267 114 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 RNU6-897P-201ENST00000517135 105 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 AC010615.1-201ENST00000594254 1764 ntBASIC2.51□□□□□ -2.01
NCKIPSDQ9NZQ3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms