Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 AC021205.2-201ENST00000480069 347 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 AC074198.2-201ENST00000508153 258 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 HSPE1P18-201ENST00000517602 280 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 MRPS18CP4-201ENST00000535821 231 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 MIR3910-1-201ENST00000580936 111 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 MIR4435-1-201ENST00000582552 80 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 AL078604.3-201ENST00000615580 211 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 AC093010.3-201ENST00000570269 15214 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 AP003122.5-201ENST00000527668 3766 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 MIR22-201ENST00000362190 85 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 snoU2_19.1-201ENST00000362361 80 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RNU4-82P-201ENST00000362443 140 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RNU1-35P-201ENST00000362782 153 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RNU6-653P-201ENST00000363074 106 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 SNORA14A-201ENST00000364773 135 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RNY1P5-201ENST00000383890 115 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RNU6-125P-201ENST00000384505 107 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 MIR29B2-201ENST00000385055 81 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RNU7-170P-201ENST00000459303 61 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 SNORA70.14-201ENST00000516205 110 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 DEFB131C-201ENST00000528817 165 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 MIR4319-201ENST00000577285 85 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 MIR4308-201ENST00000580634 81 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 AC008739.2-201ENST00000597006 317 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 AC008873.1-201ENST00000625051 138 ntBASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC87Q9NVE4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AL157777.2-201ENST00000258070 137 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 SNORD87-201ENST00000364849 89 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 MIR1261-201ENST00000408659 82 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 RNA5SP504-201ENST00000410676 117 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 RNA5SP184-201ENST00000411071 108 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 EIF4EP4-201ENST00000424916 578 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 BTF3P11-201ENST00000426582 477 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AL135938.1-201ENST00000443141 297 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AC091021.1-201ENST00000468051 388 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 SRIP1-201ENST00000489235 288 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 RNA5SP112-201ENST00000515937 99 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 RNY3P16-201ENST00000516338 101 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 RNU1-117P-201ENST00000517041 158 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 MIR3684-201ENST00000579779 74 ntBASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC87Q9NVE4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 Y_RNA.243-201ENST00000364481 109 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 RNU6-1083P-201ENST00000384022 107 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 SNORA67.2-201ENST00000384300 149 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 RNU6-493P-201ENST00000391321 108 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AL357139.1-201ENST00000407792 426 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AC105272.1-201ENST00000438604 198 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 RPS27P26-201ENST00000494583 239 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 SNORD59.2-201ENST00000516873 68 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 MIR4765-201ENST00000585007 77 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AL133393.1-201ENST00000603277 287 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 AL008718.3-201ENST00000610217 321 ntBASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC87Q9NVE4 Z98742.2-201ENST00000431564 187 ntBASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 AC136628.3-201ENST00000521868 290 ntBASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 AC103810.1-201ENST00000579873 453 ntBASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 AC108706.1-201ENST00000611053 297 ntBASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC87Q9NVE4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
CCDC87Q9NVE4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
CCDC87Q9NVE4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
CCDC87Q9NVE4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC87Q9NVE4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC87Q9NVE4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC87Q9NVE4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 MIR30E-201ENST00000362104 92 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 SNORD115-30-201ENST00000364117 82 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 SNORD32B-201ENST00000364460 84 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 RNU6-187P-201ENST00000384139 106 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 MIR586-201ENST00000385035 97 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms