Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 AL445305.1-201ENST00000432577 575 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 SNORA20.3-201ENST00000516880 132 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 CBX3P8-201ENST00000532412 525 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 AC104581.2-201ENST00000572227 430 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 MIR5006-201ENST00000583027 110 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 AP000942.3-201ENST00000603702 160 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 TCL6_2.1-201ENST00000615162 119 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 AC022513.1-201ENST00000624512 117 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 AC099654.14-201ENST00000638599 341 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 LINC02555-201ENST00000563933 1951 ntBASIC1.84□□□□□ -2.11
RPF1Q9H9Y2 ZNF204P-201ENST00000416749 2397 ntBASIC1.84□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.166-201ENST00000363730 102 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 RNU6-595P-201ENST00000363944 107 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 SNORD115-32-201ENST00000364079 82 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 RNU6-1050P-201ENST00000410388 107 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 MTCO3P29-201ENST00000432119 779 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 AC107399.1-201ENST00000451226 265 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 snoU13.30-201ENST00000458951 104 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 AC010531.2-201ENST00000465012 153 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 HMGN1P12-201ENST00000499125 195 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 PRDX4P1-201ENST00000507189 574 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 AC027288.2-201ENST00000553028 243 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 AC022254.1-201ENST00000567857 235 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 MIR4713-201ENST00000582691 75 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 RPL17P51-201ENST00000605218 238 ntBASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
RPF1Q9H9Y2 BX322639.1-202ENST00000423987 2213 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 RNU6-601P-201ENST00000384540 107 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 RNA5SP501-201ENST00000410990 112 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 RPL37P10-201ENST00000412884 288 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 MTCO1P44-201ENST00000441935 243 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 MTND3P10-201ENST00000450967 341 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 RPL7P42-201ENST00000481005 679 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AC116353.2-201ENST00000505332 712 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.691-201ENST00000516611 103 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 RNU6-58P-201ENST00000517143 103 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AC026470.2-201ENST00000561492 181 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AC024614.2-201ENST00000577584 372 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 MIR4255-201ENST00000579351 72 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AC137590.2-201ENST00000619709 240 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 AC130454.1-201ENST00000622948 401 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 ZNF299P-201ENST00000406845 1804 ntBASIC1.82□□□□□ -2.12
RPF1Q9H9Y2 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNU6-23P-201ENST00000363283 107 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 SNORD115-8-201ENST00000363856 82 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 SNORD115-38-201ENST00000365037 82 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.404-201ENST00000383978 102 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNU6-17P-201ENST00000384245 107 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNU6-1026P-201ENST00000384465 108 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNU6-18P-201ENST00000384527 107 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNU2-40P-201ENST00000410833 196 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC009310.1-201ENST00000414414 451 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC009237.7-201ENST00000447357 229 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 SNORD13-201ENST00000459299 104 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNA5SP57-201ENST00000459463 123 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNA5SP384-201ENST00000516615 116 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC005668.1-201ENST00000571142 476 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC005014.2-201ENST00000607795 599 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC009229.3-201ENST00000608056 282 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 AC098657.3-201ENST00000620434 263 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 TPTEP1-208ENST00000636884 213 ntBASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
RPF1Q9H9Y2 RNU6-593P-201ENST00000364716 112 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 SNORD48-201ENST00000364953 64 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.303-201ENST00000364998 94 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.405-201ENST00000383979 100 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.451-201ENST00000384200 100 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.482-201ENST00000384377 111 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.524-201ENST00000384564 100 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.561-201ENST00000384694 100 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 SNORA48.1-201ENST00000390879 135 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 MIR1283-1-201ENST00000408494 87 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 RNU6-1213P-201ENST00000517075 94 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 RRN3P3-201ENST00000549207 578 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 UBL5P4-201ENST00000562584 236 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 MIR4448-201ENST00000584360 86 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 uc_338.5-201ENST00000611839 155 ntBASIC1.8□□□□□ -2.12
RPF1Q9H9Y2 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 329 ms