Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AL139109.1-201ENST00000455491 297 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-1098P-201ENST00000516772 96 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AC008749.1-201ENST00000597650 306 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AL590240.4-201ENST00000616908 390 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AC141273.2-201ENST00000618989 130 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AC006001.4-201ENST00000622243 395 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AC006386.2-201ENST00000624491 75 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AC012005.1-201ENST00000624575 75 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 MIR3674-201ENST00000636576 68 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 AC110774.1-201ENST00000623567 2018 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 MIR410-201ENST00000362222 80 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 Y_RNA.277-201ENST00000364754 102 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-1264P-201ENST00000383891 107 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 Y_RNA.569-201ENST00000384749 103 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 MRPS10P1-201ENST00000448483 130 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AC005042.3-201ENST00000453230 174 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AC003982.1-202ENST00000469928 248 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-107P-201ENST00000516643 102 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 RNU2-31P-201ENST00000516954 155 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-586P-201ENST00000517265 104 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AC079600.2-201ENST00000550076 130 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AL033523.1-201ENST00000605153 153 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AC008873.1-201ENST00000625051 138 ntBASIC3.06□□□□□ -1.92
PCIF1Q9H4Z3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 RNU1-112P-201ENST00000364401 164 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-326P-201ENST00000365480 107 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-338P-201ENST00000383888 105 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 Y_RNA.418-201ENST00000384029 102 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 MIR181B1-201ENST00000385240 110 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 MT-TR-201ENST00000387439 65 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-1199P-201ENST00000411249 104 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 AC244505.4-201ENST00000434905 287 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 AC025750.2-201ENST00000442609 450 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 SSXP5-201ENST00000443473 287 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 ZNF861P-201ENST00000588126 639 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 AC069294.1-201ENST00000608397 350 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 AL365361.1-201ENST00000566942 3481 ntBASIC3.05□□□□□ -1.92
PCIF1Q9H4Z3 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 Y_RNA.383-201ENST00000383855 97 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 RPL23AP36-201ENST00000413895 458 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 AC087499.2-201ENST00000432861 149 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 POLR2KP2-201ENST00000438155 177 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 RPL23AP58-201ENST00000440453 469 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 AC023141.11-201ENST00000508864 202 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 RNU5F-4P-201ENST00000516581 114 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 RPL17P51-201ENST00000605218 238 ntBASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.04□□□□□ -1.92
PCIF1Q9H4Z3 MAPK10-362ENST00000641864 4484 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-454P-201ENST00000364292 107 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-1310P-201ENST00000384153 107 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 SNORD58.1-201ENST00000391313 66 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 MIR1294-201ENST00000408503 142 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 RNU2-54P-201ENST00000410299 190 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 RNU2-14P-201ENST00000411053 191 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 COTL1P1-201ENST00000422309 375 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 MTCO1P5-201ENST00000433573 344 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 RN7SKP132-201ENST00000516001 208 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-155P-201ENST00000516347 100 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AC018630.3-201ENST00000542637 96 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 EIF4BP1-201ENST00000554881 351 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 MIR4643-201ENST00000577473 78 ntBASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
PCIF1Q9H4Z3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms