Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 U6.115-201ENST00000636045 103 ntBASIC3.73□□□□□ -1.81
TRAIPQ9BWF2 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.73□□□□□ -1.81
TRAIPQ9BWF2 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
TRAIPQ9BWF2 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 AC068647.1-201ENST00000489539 2265 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 Y_RNA.243-201ENST00000364481 109 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 SNORA20.1-201ENST00000364790 130 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 Y_RNA.352-201ENST00000365439 102 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 RNU6-1072P-201ENST00000384703 107 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 RNU6-443P-201ENST00000384780 107 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 RNU6-1146P-201ENST00000516282 102 ntBASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
TRAIPQ9BWF2 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
TRAIPQ9BWF2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 AC093908.1-201ENST00000623125 8092 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.54-201ENST00000362766 105 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.447-201ENST00000384184 113 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 SNORA26.7-201ENST00000391288 122 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 AL031003.1-201ENST00000404229 172 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 MRPS10P1-201ENST00000448483 130 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 AC010598.1-201ENST00000510378 103 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 AC012433.1-201ENST00000588916 398 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 AC090115.4-201ENST00000609970 188 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 AC022149.2-201ENST00000621061 203 ntBASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.71□□□□□ -1.82
TRAIPQ9BWF2 SNORA38.1-201ENST00000364172 131 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.329-201ENST00000365209 107 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.518-201ENST00000384552 113 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 AL031121.1-201ENST00000406553 254 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 RN7SKP284-201ENST00000411002 343 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 RNU6-1199P-201ENST00000411249 104 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 AC010154.1-201ENST00000425857 269 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 MTCO1P44-201ENST00000441935 243 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 AC115115.1-201ENST00000449927 248 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 AC025647.1-201ENST00000517879 253 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 MIR5004-201ENST00000579078 107 ntBASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TRAIPQ9BWF2 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.136-201ENST00000363444 102 ntBASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 SNORD115-30-201ENST00000364117 82 ntBASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 NDUFB9P3-201ENST00000521269 501 ntBASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 MIR4276-201ENST00000584832 70 ntBASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 AC005000.2-201ENST00000605468 310 ntBASIC3.69□□□□□ -1.82
TRAIPQ9BWF2 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.477-201ENST00000384352 108 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 MIR29C-201ENST00000385231 88 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 RNU4-47P-201ENST00000410876 114 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 AC010401.1-201ENST00000463867 348 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 RNU6-436P-201ENST00000516171 114 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 MIR5680-201ENST00000577577 84 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 MIR4658-201ENST00000584344 65 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 DEFB117-201ENST00000602356 141 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 AL159152.1-201ENST00000635019 2587 ntBASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.68□□□□□ -1.82
TRAIPQ9BWF2 MIR30E-201ENST00000362104 92 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.44-201ENST00000362676 108 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 SNORD115-3-201ENST00000363100 82 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 AP002088.1-201ENST00000382740 395 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.562-201ENST00000384695 113 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 RNU6-856P-201ENST00000516959 98 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 AC006435.5-201ENST00000624486 112 ntBASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRAIPQ9BWF2 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 RNU6-407P-201ENST00000365280 104 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 Y_RNA.416-201ENST00000384014 113 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 AL109933.2-201ENST00000452651 260 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 SNORD65B-201ENST00000459126 73 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 AC027419.1-201ENST00000522976 328 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 AC007536.1-201ENST00000533382 349 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 MIR3128-201ENST00000581957 66 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 U2.14-201ENST00000615943 113 ntBASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
TRAIPQ9BWF2 SNORD114-7-201ENST00000362520 77 ntBASIC3.65□□□□□ -1.83
TRAIPQ9BWF2 RNU4-80P-201ENST00000363200 141 ntBASIC3.65□□□□□ -1.83
TRAIPQ9BWF2 SNORA20B-201ENST00000384220 132 ntBASIC3.65□□□□□ -1.83
TRAIPQ9BWF2 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
TRAIPQ9BWF2 SNORA40.19-201ENST00000390846 128 ntBASIC3.65□□□□□ -1.83
TRAIPQ9BWF2 MIR873-201ENST00000401120 77 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms