Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 MIR4419B-201ENST00000577260 68 ntBASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 MIR1273D-201ENST00000577266 86 ntBASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 AC080078.3-201ENST00000605407 463 ntBASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 AL160413.1-201ENST00000622780 310 ntBASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 MTND4P29-201ENST00000503122 1372 ntBASIC1.79□□□□□ -2.12
CCDC28BQ9BUN5 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 RNU6-1115P-201ENST00000362490 106 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 RNU6-99P-201ENST00000364721 107 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 MIR625-201ENST00000385047 85 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 MIR634-201ENST00000385208 97 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 Y_RNA.579-201ENST00000390939 94 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 RNU6-159P-201ENST00000391080 106 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 TOMM22P6-201ENST00000465035 409 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 AC107032.1-201ENST00000485945 480 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 RPS23P5-201ENST00000495419 428 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 ANXA2P1-201ENST00000505539 926 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 RNU6-1114P-201ENST00000516022 107 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 RNU6-667P-201ENST00000517186 102 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 MIR2355-201ENST00000517199 87 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 MIR4299-201ENST00000577899 72 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 SNRPGP17-201ENST00000603780 214 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 MIR1248-201ENST00000629190 106 ntBASIC1.78□□□□□ -2.12
CCDC28BQ9BUN5 Y_RNA.106-201ENST00000363189 100 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.197-201ENST00000364004 102 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.252-201ENST00000364556 101 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.463-201ENST00000384271 102 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 RNU6-1156P-201ENST00000410365 100 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 SRIP3-201ENST00000413200 219 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC092423.1-201ENST00000430165 186 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 USP9YP16-201ENST00000430287 407 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 UBE2V1P7-201ENST00000446395 340 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC009237.7-201ENST00000447357 229 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 USP9YP23-201ENST00000455085 407 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AP000870.1-201ENST00000472927 406 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC027575.1-201ENST00000481064 460 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 RNU5F-4P-201ENST00000516581 114 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 RNU6-965P-201ENST00000516721 96 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC091144.1-201ENST00000519573 138 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC144568.1-201ENST00000520139 137 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC090617.3-201ENST00000573670 475 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AL080274.1-201ENST00000605565 220 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 ZNF204P-201ENST00000416749 2397 ntBASIC1.77□□□□□ -2.13
CCDC28BQ9BUN5 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 AC006026.1-201ENST00000444025 1803 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 SNORD42.2-201ENST00000365570 69 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 SNORA18.2-201ENST00000383865 132 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.395-201ENST00000383945 109 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.428-201ENST00000384078 102 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 MIR487A-201ENST00000385009 80 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 AL135786.1-201ENST00000415892 214 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 EDDM3CP-201ENST00000415977 425 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 AC004386.2-201ENST00000441858 148 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.639-201ENST00000458981 102 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 RNU6-344P-201ENST00000516635 111 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 RNU6-1098P-201ENST00000516772 96 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 AC026271.5-201ENST00000577873 130 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 MIR3618-201ENST00000580330 88 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 MIR5006-201ENST00000583027 110 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 AC091925.1-201ENST00000623204 462 ntBASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC28BQ9BUN5 MTND5P16-201ENST00000460269 1703 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 RNU6-874P-201ENST00000362390 105 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 RNU1-62P-201ENST00000362599 164 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.112-201ENST00000363250 102 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 SNORD31B-201ENST00000364977 69 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 RNU1-115P-201ENST00000365329 160 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 Y_RNA.419-201ENST00000384041 102 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 RNU6-997P-201ENST00000384725 107 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 MIR10B-201ENST00000385011 110 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 SNORA69.1-201ENST00000390904 137 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 RNA5SP213-201ENST00000391031 106 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 MIR300-201ENST00000401138 83 ntBASIC1.75□□□□□ -2.13
CCDC28BQ9BUN5 RN7SKP284-201ENST00000411002 343 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms