Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RNU6-859P-201ENST00000362728 107 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RNU5F-3P-201ENST00000363767 117 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RNU6-318P-201ENST00000384283 103 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 MIR320B2-201ENST00000408479 138 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RPL30P4-201ENST00000429309 333 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RPS15AP7-201ENST00000439294 405 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 CYP2C59P-201ENST00000457790 269 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 AC023141.11-201ENST00000508864 202 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 SNORA25.14-201ENST00000516481 132 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RNA5SP148-201ENST00000516527 94 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 SNORA31.16-201ENST00000516773 139 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 AP002392.1-201ENST00000537692 208 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 RMST_8.1-201ENST00000610287 165 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 MIR5739-201ENST00000619803 80 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 AL513302.2-201ENST00000562313 1842 ntBASIC3.02□□□□□ -1.93
LRFN3Q9BTN0 AC069528.2-201ENST00000624849 1991 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 RNU4-90P-201ENST00000362773 141 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 RNU6-926P-201ENST00000384075 107 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 Y_RNA.506-201ENST00000384494 102 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 RNU6-125P-201ENST00000384505 107 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 MIR512-1-201ENST00000384913 84 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 MIR218-1-201ENST00000384999 110 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 RNU6-493P-201ENST00000391321 108 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 RPL23AP67-201ENST00000465341 474 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 AF186996.7-201ENST00000492781 209 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 Y_RNA.703-201ENST00000516846 111 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 RNA5SP54-201ENST00000516951 92 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 AC024405.2-202ENST00000532731 184 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 FAM35CP-201ENST00000554755 2470 ntBASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
LRFN3Q9BTN0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC017071.1-201ENST00000564407 2204 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3□□□□□ -1.93
LRFN3Q9BTN0 Y_RNA.44-201ENST00000362676 108 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 RNU6-682P-201ENST00000363843 106 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 RNA5SP240-201ENST00000365355 128 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 RNU6-541P-201ENST00000384709 110 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 MIR32-201ENST00000384965 70 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 RNA5SP213-201ENST00000391031 106 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AL033519.2-201ENST00000403958 392 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 RNU6-1328P-201ENST00000410938 106 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 COX6CP10-201ENST00000416832 224 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 EIF1P2-201ENST00000428233 350 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC005002.2-201ENST00000438228 269 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3□□□□□ -1.93
LRFN3Q9BTN0 NDUFB4P10-201ENST00000452541 359 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC091179.1-201ENST00000461606 579 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC140059.1-201ENST00000489238 361 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC092185.1-201ENST00000491371 97 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 SEPT14P8-201ENST00000508026 178 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 Y_RNA.683-201ENST00000516508 93 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC087441.2-201ENST00000529141 262 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3□□□□□ -1.93
LRFN3Q9BTN0 AL356575.1-201ENST00000603008 283 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 AL078605.1-201ENST00000603529 500 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3□□□□□ -1.93
LRFN3Q9BTN0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 Y_RNA.286-201ENST00000364813 102 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 RNY4P28-201ENST00000365281 93 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 SNORA36A-201ENST00000384221 132 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 MIR627-201ENST00000384979 97 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 MIR208B-201ENST00000401172 77 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 MIR548I2-201ENST00000408348 149 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 Y_RNA.626-201ENST00000411288 95 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 AC104332.2-201ENST00000429959 156 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 Z96811.1-201ENST00000445880 108 ntBASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.99□□□□□ -1.93
LRFN3Q9BTN0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
LRFN3Q9BTN0 U3.9-201ENST00000363823 204 ntBASIC2.98□□□□□ -1.93
LRFN3Q9BTN0 SNORD115-8-201ENST00000363856 82 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 163.8 ms