Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR5006-201ENST00000583027 110 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 AC018638.8-201ENST00000588755 281 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 AC124303.1-201ENST00000605703 360 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.56□□□□□ -2.16
VPS39Q96JC1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
VPS39Q96JC1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
VPS39Q96JC1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
VPS39Q96JC1 RNU6-271P-201ENST00000363858 105 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 RNU6-842P-201ENST00000384269 107 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 Y_RNA.533-201ENST00000384596 114 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 MIR32-201ENST00000384965 70 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 RNU6-360P-201ENST00000390944 104 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 CYCSP49-201ENST00000420810 319 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 FTH1P12-201ENST00000432137 551 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 AC016717.1-201ENST00000448918 286 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 OR2AQ1P-201ENST00000451972 200 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 RNU6-329P-201ENST00000459618 107 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 RNA5SP445-201ENST00000515889 115 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 AF235103.2-201ENST00000525753 346 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 BX248123.2-201ENST00000606318 124 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 AC093913.1-201ENST00000614178 329 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 MIR6128-201ENST00000615528 109 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 MIR7843-201ENST00000622274 79 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.55□□□□□ -2.16
VPS39Q96JC1 AC068205.3-201ENST00000636385 468 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 ZNF204P-201ENST00000416749 2397 ntBASIC1.55□□□□□ -2.16
VPS39Q96JC1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
VPS39Q96JC1 MIR520A-201ENST00000384862 85 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MIR320A-201ENST00000385302 82 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
VPS39Q96JC1 RNA5SP118-201ENST00000410385 109 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RNU6-955P-201ENST00000410497 104 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 AC009161.1-201ENST00000417306 376 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MTATP6P13-201ENST00000438531 667 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MTND4LP16-201ENST00000440828 295 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 JTBP1-201ENST00000441314 247 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.54□□□□□ -2.16
VPS39Q96JC1 AC016925.1-201ENST00000458303 298 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RPS29P23-201ENST00000458635 123 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RPL26P26-201ENST00000480251 434 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RPL30P10-201ENST00000488148 337 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 AC018710.1-201ENST00000506509 158 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.54□□□□□ -2.16
VPS39Q96JC1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS39Q96JC1 Y_RNA.675-201ENST00000516389 149 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RNU6-548P-201ENST00000517083 115 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RNU6-902P-201ENST00000517212 91 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 AC016256.1-201ENST00000547971 354 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MIR4790-201ENST00000577799 79 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MIR4742-201ENST00000581069 85 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 RPL17P51-201ENST00000605218 238 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 PRR13P7-201ENST00000605538 430 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 AC005562.2-201ENST00000618264 111 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 SCARNA4-201ENST00000629045 128 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 MTND4P5-201ENST00000435821 1374 ntBASIC1.54□□□□□ -2.16
VPS39Q96JC1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.54□□□□□ -2.16
VPS39Q96JC1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
VPS39Q96JC1 RNU6-1026P-201ENST00000384465 108 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 MIR517C-201ENST00000385103 95 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC007098.1-201ENST00000420122 367 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 MTND1P17-201ENST00000448961 204 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 RRN3P3-201ENST00000549207 578 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS39Q96JC1 AC069114.2-201ENST00000604699 304 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 BNIP3P10-201ENST00000605360 577 ntBASIC1.53□□□□□ -2.16
VPS39Q96JC1 AL159152.1-201ENST00000635019 2587 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
VPS39Q96JC1 Y_RNA.505-201ENST00000384489 102 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AL356776.1-201ENST00000406574 447 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 MIR1323-201ENST00000408090 73 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 MIR1304-201ENST00000408243 91 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 RN7SKP51-201ENST00000410781 304 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS39Q96JC1 AL591806.2-201ENST00000433122 173 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC099677.2-201ENST00000436385 175 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 HSPE1P9-201ENST00000440046 311 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 snoU13.23-201ENST00000458863 104 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC007215.1-201ENST00000464893 276 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC108210.2-201ENST00000503681 201 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 MTND5P5-201ENST00000503764 376 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms