Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MIR3136-201ENST00000583498 78 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 ZNF861P-201ENST00000588126 639 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 MIR6715A-201ENST00000615929 79 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AL355596.1-201ENST00000565399 3996 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP295-201ENST00000362655 121 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.101-201ENST00000363154 102 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-704P-201ENST00000364162 103 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 SNORD50.2-201ENST00000365465 70 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-804P-201ENST00000384286 107 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 ELOCP21-201ENST00000412558 336 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AC009237.7-201ENST00000447357 229 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AIG1P1-201ENST00000503376 148 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-346P-201ENST00000516288 111 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-191P-201ENST00000516295 94 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AC105137.2-201ENST00000569073 466 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AL713866.2-201ENST00000603579 219 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 SNRPGP20-201ENST00000604477 205 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AC004832.4-201ENST00000608952 331 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AL365265.1-201ENST00000621045 234 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 AL136164.4-201ENST00000625013 2135 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 snoU18.1-201ENST00000629629 71 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 U6.98-201ENST00000637157 84 ntBASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USHBP1Q8N6Y0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.304-201ENST00000365011 112 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 SNORA40.19-201ENST00000390846 128 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-1248P-201ENST00000391096 64 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP475-201ENST00000410568 110 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 MTATP6P29-201ENST00000415057 132 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 RAB28P5-201ENST00000427490 651 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 RN7SL75P-201ENST00000461926 281 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 AL121594.1-201ENST00000475906 575 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 MIR3923-201ENST00000579521 83 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 MIR4308-201ENST00000580634 81 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 HMGN2P15-201ENST00000585707 270 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 HSPE1P7-201ENST00000604681 321 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 AC104465.1-201ENST00000611365 139 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 AC005520.5-201ENST00000613926 164 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 MIR6076-201ENST00000617521 113 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 SNORD98-201ENST00000636377 67 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
USHBP1Q8N6Y0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
USHBP1Q8N6Y0 AC091152.2-201ENST00000591628 2569 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 Y_RNA.8-201ENST00000362353 102 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU1-62P-201ENST00000362599 164 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-799P-201ENST00000363567 107 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-211P-201ENST00000384047 107 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 SNORA67.4-201ENST00000384688 142 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-1135P-201ENST00000411083 103 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 BMS1P22-201ENST00000414726 313 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 CYCSP48-201ENST00000417124 323 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 snoU13.28-201ENST00000459235 104 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 AC091179.3-201ENST00000474761 144 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-966P-201ENST00000516479 104 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 MIR548AI-201ENST00000579940 88 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 AC093908.1-201ENST00000623125 8092 ntBASIC3.58□□□□□ -1.84
USHBP1Q8N6Y0 RNU4-80P-201ENST00000363200 141 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 MIR549A-201ENST00000385268 96 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 MIR208B-201ENST00000401172 77 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 MIR887-201ENST00000401258 79 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-1199P-201ENST00000411249 104 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 AC107626.1-201ENST00000471084 183 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 SRIP1-201ENST00000489235 288 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 RNU5F-2P-201ENST00000516066 82 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-1219P-201ENST00000516143 112 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-155P-201ENST00000516347 100 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 MTND5P41-201ENST00000517498 206 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 MIR5692C2-201ENST00000577959 77 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 AP001485.1-201ENST00000604799 199 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms