Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 RNU1-133P-201ENST00000364867 167 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 SNORA9-201ENST00000384215 133 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 MIR93-201ENST00000385024 80 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 MIR1251-201ENST00000408552 70 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 RNA5SP511-201ENST00000410487 115 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 RNA5SP104-201ENST00000410989 118 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AL035423.1-201ENST00000420331 213 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AC083863.1-201ENST00000438811 231 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 SNORD11-201ENST00000459124 84 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AC025445.1-201ENST00000502728 300 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 EIF4A1P12-201ENST00000551910 141 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 FTX_3.1-201ENST00000610451 147 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RNU6-600P-201ENST00000362524 99 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RNU6-1099P-201ENST00000363533 107 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RNU6-884P-201ENST00000363889 107 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 Y_RNA.203-201ENST00000364106 102 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RNU6-219P-201ENST00000364728 107 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 MIR34B-201ENST00000385076 84 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RNA5SP201-201ENST00000410316 124 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 Y_RNA.611-201ENST00000410682 108 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RPS29P4-201ENST00000414733 161 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RPL36AP21-201ENST00000490372 323 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 OR9P1P-201ENST00000496431 281 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 AC104619.4-201ENST00000510773 249 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 SNORA70.16-201ENST00000516390 95 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 AC109329.2-201ENST00000519658 482 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 AC093732.2-201ENST00000607950 274 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 AC096577.2-201ENST00000611455 153 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.03□□□□□ -1.76
NPAS3Q8IXF0 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AC002543.1-201ENST00000299783 1954 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AC093831.2-201ENST00000624393 3427 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 SNORA27.1-201ENST00000362604 124 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 SNORD74.4-201ENST00000364129 80 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 RNU6-690P-201ENST00000365242 106 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 Y_RNA.531-201ENST00000384589 121 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 RNU6-1104P-201ENST00000384723 104 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 MIR183-201ENST00000384958 110 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AC245291.1-201ENST00000419501 328 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AL645939.1-201ENST00000453429 797 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 RPL27AP5-201ENST00000469428 449 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AC022523.2-201ENST00000561045 150 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 MIR5187-201ENST00000583479 76 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 YPEL5P2-201ENST00000605553 359 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 U6.105-201ENST00000637379 88 ntBASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS3Q8IXF0 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 SNORD114-7-201ENST00000362520 77 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 RNU6-170P-201ENST00000362832 104 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 RNU6-1209P-201ENST00000363655 107 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 RNU6-525P-201ENST00000363685 104 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 SNORD38C-201ENST00000384381 69 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AL133475.1-201ENST00000404414 305 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AC004941.2-201ENST00000427009 228 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AC025554.1-201ENST00000505641 188 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 SCARNA15-202ENST00000516881 127 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 AC021443.1-201ENST00000604478 211 ntBASIC4.01□□□□□ -1.77
NPAS3Q8IXF0 U3.45-201ENST00000607547 219 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms