Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC114982.1-201ENST00000469402 321 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 RPL30P10-201ENST00000488148 337 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNU6-358P-201ENST00000516564 75 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNU1-117P-201ENST00000517041 158 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 MTND4LP26-201ENST00000518144 282 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 RRN3P3-201ENST00000549207 578 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 MIR5094-201ENST00000578766 85 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AC008873.1-201ENST00000625051 138 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 AL133216.2-202ENST00000634512 349 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 BX322639.1-202ENST00000423987 2213 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AC006026.1-201ENST00000444025 1803 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNU6-1235P-201ENST00000384559 107 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 MIR153-2-201ENST00000385225 87 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.42□□□□□ -2.18
SKA3Q8IX90 NCOR1P3-201ENST00000420479 303 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 MTCO3P46-201ENST00000425787 232 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 snoU13.30-201ENST00000458951 104 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 RNU6-498P-201ENST00000459468 107 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 AC010409.1-201ENST00000487382 476 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 AC082651.2-201ENST00000496833 166 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 MTND5P5-201ENST00000503764 376 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 AC018710.1-201ENST00000506509 158 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 RNU2-34P-201ENST00000516534 121 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 RNU6-548P-201ENST00000517083 115 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.42□□□□□ -2.18
SKA3Q8IX90 AC027288.2-201ENST00000553028 243 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.42□□□□□ -2.18
SKA3Q8IX90 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.42□□□□□ -2.18
SKA3Q8IX90 AC069114.2-201ENST00000604699 304 ntBASIC1.42□□□□□ -2.18
SKA3Q8IX90 ZNF299P-201ENST00000406845 1804 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 MIR126-201ENST00000362291 85 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 Y_RNA.72-201ENST00000362894 103 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-873P-201ENST00000363833 107 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 SNORD115-8-201ENST00000363856 82 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-1305P-201ENST00000364353 104 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 SNORD115-38-201ENST00000365037 82 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNA5SP190-201ENST00000365222 118 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-245P-201ENST00000384020 107 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-842P-201ENST00000384269 107 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
SKA3Q8IX90 MIR764-201ENST00000390811 85 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-510P-201ENST00000391239 108 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-174P-201ENST00000410406 106 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RN7SKP51-201ENST00000410781 304 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RN7SKP101-201ENST00000411376 320 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 MTND3P8-201ENST00000412909 339 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.41□□□□□ -2.18
SKA3Q8IX90 RPL21P111-201ENST00000418453 477 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 MTCO3P29-201ENST00000432119 779 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC099677.2-201ENST00000436385 175 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC016717.1-201ENST00000448918 286 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC067942.3-201ENST00000512025 362 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-1041P-201ENST00000516254 102 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-1016P-201ENST00000516689 94 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNA5SP54-201ENST00000516951 92 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 SNORA31.17-201ENST00000516953 127 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-58P-201ENST00000517143 103 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.41□□□□□ -2.18
SKA3Q8IX90 SUB1P4-201ENST00000566062 339 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 MIR5696-201ENST00000578474 85 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 MIR4273-201ENST00000582824 84 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 SNORD11B-201ENST00000607707 90 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AC092794.1-201ENST00000612734 582 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 MIR7843-201ENST00000622274 79 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 AL078596.1-201ENST00000624856 447 ntBASIC1.41□□□□□ -2.18
SKA3Q8IX90 RNU6-862P-201ENST00000362804 105 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 RNU6-596P-201ENST00000365395 98 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 RNU6-975P-201ENST00000384296 105 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 RNU6-541P-201ENST00000384709 110 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 MIR586-201ENST00000385035 97 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 Y_RNA.599-201ENST00000410489 109 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 RPS3AP52-201ENST00000435639 297 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 SNORD5.1-201ENST00000458800 75 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 SNORD13-201ENST00000459299 104 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.4□□□□□ -2.19
SKA3Q8IX90 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.4□□□□□ -2.19
SKA3Q8IX90 AC011712.1-201ENST00000588959 234 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 7SK.7-201ENST00000603504 247 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 AC103810.8-201ENST00000607347 118 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.4□□□□□ -2.19
SKA3Q8IX90 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.4□□□□□ -2.19
SKA3Q8IX90 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SKA3Q8IX90 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SKA3Q8IX90 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.39□□□□□ -2.19
SKA3Q8IX90 Y_RNA.248-201ENST00000364501 109 ntBASIC1.39□□□□□ -2.19
SKA3Q8IX90 RNU6-439P-201ENST00000384188 106 ntBASIC1.39□□□□□ -2.19
SKA3Q8IX90 RNU6-17P-201ENST00000384245 107 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 285 ms