Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 RNU7-57P-201ENST00000459540 60 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.01□□□□□ -2.41
USP54Q70EL1 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC-0.01□□□□□ -2.41
USP54Q70EL1 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-0.01□□□□□ -2.41
USP54Q70EL1 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC-0.01□□□□□ -2.41
USP54Q70EL1 MIR5006-201ENST00000583027 110 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 BCRP9-201ENST00000605312 388 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 AC126544.2-201ENST00000625174 749 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 RNU6-552P-201ENST00000362869 119 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNY4P16-201ENST00000364768 94 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNU4-45P-201ENST00000365469 141 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNU6-61P-201ENST00000365528 109 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 SNORD105-201ENST00000386910 85 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNA5SP219-201ENST00000390940 113 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC245047.3-201ENST00000429428 127 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC013828.2-201ENST00000532487 235 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC023050.3-201ENST00000541142 333 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC004223.2-201ENST00000590309 544 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC112187.2-201ENST00000604345 283 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AL450472.1-202ENST00000637286 180 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNA5SP214-201ENST00000363378 118 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNU6-923P-201ENST00000364753 107 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 SNORA26.3-201ENST00000391119 136 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RNU6-1093P-201ENST00000391194 107 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC106883.1-201ENST00000418805 562 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC010486.2-201ENST00000505572 483 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 RBBP4P6-201ENST00000508098 202 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC022868.1-201ENST00000517767 391 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC104695.3-201ENST00000604052 296 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-0.02□□□□□ -2.41
USP54Q70EL1 U6.108-201ENST00000637764 58 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 AC100810.6-201ENST00000638068 285 ntBASIC-0.02□□□□□ -2.41
USP54Q70EL1 MRPL42P3-201ENST00000401492 326 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 EEF1A1P40-201ENST00000412883 573 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 MTND2P9-201ENST00000422293 931 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 MRPS18CP6-201ENST00000423587 223 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 MTCYBP10-201ENST00000424905 650 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.03□□□□□ -2.41
USP54Q70EL1 TIMM9P3-201ENST00000428659 274 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 MTND1P32-201ENST00000433043 938 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC-0.03□□□□□ -2.41
USP54Q70EL1 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-0.03□□□□□ -2.41
USP54Q70EL1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.03□□□□□ -2.41
USP54Q70EL1 RNU7-12P-201ENST00000516030 62 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 SNORA25.12-201ENST00000516202 82 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.03□□□□□ -2.41
USP54Q70EL1 SNORA28-201ENST00000606769 126 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 AC004832.4-201ENST00000608952 331 ntBASIC-0.03□□□□□ -2.41
USP54Q70EL1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-0.03□□□□□ -2.41
USP54Q70EL1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.04□□□□□ -2.42
USP54Q70EL1 RNA5SP368-201ENST00000364298 116 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 U8.7-201ENST00000364940 136 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 RNU6-1186P-201ENST00000410429 97 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 RNU6-387P-201ENST00000411331 105 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 CALM2P2-201ENST00000428512 440 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 SNORA70.12-201ENST00000516084 153 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.04□□□□□ -2.42
USP54Q70EL1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-0.04□□□□□ -2.42
USP54Q70EL1 AC091805.2-201ENST00000603848 235 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 LARP7P1-201ENST00000605576 316 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.04□□□□□ -2.42
USP54Q70EL1 OR5AK4P-201ENST00000635912 903 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 AC091948.2-201ENST00000636510 279 ntBASIC-0.04□□□□□ -2.42
USP54Q70EL1 MIRLET7D-201ENST00000362263 87 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 SNORD113.3-201ENST00000364630 78 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 Y_RNA.465-201ENST00000384293 102 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 SNORA24.1-201ENST00000384401 135 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 MTND1P20-201ENST00000430341 950 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 DAP3P1-201ENST00000441522 278 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC022523.2-201ENST00000561045 150 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC131055.1-201ENST00000584626 316 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 RNU6-1192P-201ENST00000612197 107 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC007014.2-201ENST00000615581 479 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 Pinc.1-201ENST00000616452 154 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 RNU6-489P-201ENST00000618289 107 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AL390237.1-201ENST00000404226 1415 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 SNORA33-201ENST00000363664 130 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 Y_RNA.303-201ENST00000364998 94 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 Y_RNA.480-201ENST00000384364 102 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 Y_RNA.504-201ENST00000384481 104 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 MIR549A-201ENST00000385268 96 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 MIR208B-201ENST00000401172 77 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 MTND3P17-201ENST00000416968 344 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 SNAP23P1-201ENST00000433229 246 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 EXOSC3P1-201ENST00000448649 500 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC074290.1-201ENST00000448883 135 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 RNU6-917P-201ENST00000516294 104 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 IGLVI-20-201ENST00000519296 130 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 MIR4307-201ENST00000582802 84 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC097478.2-201ENST00000610572 514 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AL391903.3-201ENST00000612158 163 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC073349.3-201ENST00000617616 186 ntBASIC-0.05□□□□□ -2.42
USP54Q70EL1 AC006386.1-201ENST00000619436 415 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms