Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.146-201ENST00000363549 102 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 SNORA25.9-201ENST00000365087 128 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.314-201ENST00000365114 102 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 RNU6-234P-201ENST00000365229 104 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.358-201ENST00000365491 99 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 RNU6-1026P-201ENST00000384465 108 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 SNORA80E-201ENST00000384744 137 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC007098.1-201ENST00000420122 367 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 MRPS18CP6-201ENST00000423587 223 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC096644.2-201ENST00000429278 159 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC096638.1-201ENST00000444678 216 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC027575.1-201ENST00000481064 460 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 RPS23P5-201ENST00000495419 428 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 SNORA25.14-201ENST00000516481 132 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 MIR514B-201ENST00000516774 80 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 RNA5SP490-201ENST00000517141 136 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 PRELID2P1-201ENST00000552837 301 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AL137847.3-201ENST00000611521 109 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 RMST_6.1-201ENST00000611980 203 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC005520.5-201ENST00000613926 164 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 AC005562.2-201ENST00000618264 111 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 RNU6-545P-201ENST00000362681 104 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 RNU6-438P-201ENST00000365561 103 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.509-201ENST00000384506 99 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 SNORA40.19-201ENST00000390846 128 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 RPL21P1-201ENST00000399532 476 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 MIR190B-201ENST00000401119 79 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 RNU2-48P-201ENST00000410694 191 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 MTCYBP10-201ENST00000424905 650 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 HMGN2P18-201ENST00000450680 270 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 PRELID3BP1-201ENST00000457142 540 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AC093259.1-201ENST00000509755 300 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 RNU6-699P-201ENST00000517081 110 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 RNU6-58P-201ENST00000517143 103 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AC034114.1-201ENST00000520293 285 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AL031274.2-201ENST00000599419 203 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 MIR8070-201ENST00000616510 88 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AL132822.1-201ENST00000617063 513 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.97□□□□□ -2.09
PDLIM3Q53GG5 AC006026.1-201ENST00000444025 1803 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 MTND5P10-201ENST00000603719 1809 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 MIR369-201ENST00000362155 70 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 RNU6-873P-201ENST00000363833 107 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.187-201ENST00000363918 113 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 RNU6-17P-201ENST00000384245 107 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 RNU6-18P-201ENST00000384527 107 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 HMGN2P39-201ENST00000398005 273 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AL512604.1-201ENST00000404812 257 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 RNU6-1156P-201ENST00000410365 100 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC004866.1-201ENST00000411748 78 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 USP9YP16-201ENST00000430287 407 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 USP9YP23-201ENST00000455085 407 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 ELOCP24-201ENST00000456370 334 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 U8.22-201ENST00000459141 133 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 RN7SL636P-201ENST00000497504 294 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC107222.1-201ENST00000510899 637 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC022868.1-201ENST00000517767 391 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC027288.2-201ENST00000553028 243 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC104581.2-201ENST00000572227 430 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC026271.5-201ENST00000577873 130 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 AC005296.1-201ENST00000616145 209 ntBASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
PDLIM3Q53GG5 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 MIR21-201ENST00000362134 72 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 SNORD115-32-201ENST00000364079 82 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 RNU6-1040P-201ENST00000383974 107 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 SNORA64-201ENST00000384674 134 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 AL033519.2-201ENST00000403958 392 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 MIR1262-201ENST00000408276 93 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 MIR320B2-201ENST00000408479 138 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.605-201ENST00000410577 105 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 AC018630.3-201ENST00000542637 96 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 AC233702.2-202ENST00000562547 291 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 MIR5701-3-201ENST00000578890 82 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 MIR5701-1-201ENST00000585138 82 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 SNRPGP20-201ENST00000604477 205 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 snoU13.31-201ENST00000607291 104 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 AL050343.2-201ENST00000607338 280 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 MIR5701-2-201ENST00000615634 82 ntBASIC1.95□□□□□ -2.1
PDLIM3Q53GG5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AC009487.4-201ENST00000624969 3585 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AL356292.1-201ENST00000283110 373 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 RNU6-879P-201ENST00000364328 108 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms