Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL513302.2-201ENST00000562313 1842 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.61□□□□□ -1.83
SOX4Q06945 U8.7-201ENST00000364940 136 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 RNU6-383P-201ENST00000410864 94 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 HSPE1P21-201ENST00000438283 308 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX4Q06945 RNU7-170P-201ENST00000459303 61 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 RPS29P2-201ENST00000479278 136 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 SRIP1-201ENST00000489235 288 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 PDCD5P2-201ENST00000507570 312 ntBASIC3.61□□□□□ -1.83
SOX4Q06945 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.61□□□□□ -1.83
SOX4Q06945 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX4Q06945 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX4Q06945 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SOX4Q06945 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
SOX4Q06945 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
SOX4Q06945 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.61□□□□□ -1.83
SOX4Q06945 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SOX4Q06945 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.6□□□□□ -1.83
SOX4Q06945 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX4Q06945 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.6□□□□□ -1.83
SOX4Q06945 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SOX4Q06945 Z83843.1-201ENST00000604070 3685 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SOX4Q06945 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX4Q06945 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX4Q06945 RNY1P11-201ENST00000363759 113 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 RNU6-1210P-201ENST00000363775 107 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 Y_RNA.393-201ENST00000383936 102 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 MIR147B-201ENST00000390185 80 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 AL591034.1-201ENST00000407447 340 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 AC002075.2-201ENST00000425207 252 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX4Q06945 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX4Q06945 EEF1B2P7-201ENST00000451177 676 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX4Q06945 RPS4XP2-201ENST00000458402 793 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 RNU7-107P-201ENST00000459121 61 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 RN7SL807P-201ENST00000470923 297 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 RAC1P5-201ENST00000512182 576 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 PHBP14-201ENST00000512887 367 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX4Q06945 U7.2-201ENST00000607576 63 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 AC010889.1-201ENST00000566193 2666 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SOX4Q06945 AC069528.2-201ENST00000624849 1991 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 CEP170P1-201ENST00000502249 4587 ntBASIC3.6□□□□□ -1.83
SOX4Q06945 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SOX4Q06945 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX4Q06945 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SOX4Q06945 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX4Q06945 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX4Q06945 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX4Q06945 RNU1-70P-201ENST00000362618 164 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 SNORA63.4-201ENST00000362763 126 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 RNU6-655P-201ENST00000362858 107 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 AP002088.1-201ENST00000382740 395 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 RNU6-1064P-201ENST00000410626 104 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 AC117454.1-201ENST00000491120 168 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 RN7SL504P-201ENST00000494496 287 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 RN7SKP179-201ENST00000516126 217 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 SNORA70.19-201ENST00000516717 90 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX4Q06945 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.59□□□□□ -1.83
SOX4Q06945 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.59□□□□□ -1.83
SOX4Q06945 MIR6076-201ENST00000617521 113 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 AC244205.2-202ENST00000635781 342 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 U6.98-201ENST00000637157 84 ntBASIC3.59□□□□□ -1.83
SOX4Q06945 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX4Q06945 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX4Q06945 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
SOX4Q06945 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
SOX4Q06945 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX4Q06945 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
SOX4Q06945 AC007256.1-201ENST00000392253 2765 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 snoU2_19.1-201ENST00000362361 80 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 RNU6-1305P-201ENST00000364353 104 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 Y_RNA.251-201ENST00000364551 99 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 Y_RNA.525-201ENST00000384570 113 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 RNU6-429P-201ENST00000384582 108 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 HSPE1P13-201ENST00000451143 297 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX4Q06945 HMGN2P16-201ENST00000456802 261 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX4Q06945 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX4Q06945 MIR5680-201ENST00000577577 84 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX4Q06945 U7.8-201ENST00000619968 63 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 AC068647.2-201ENST00000637380 353 ntBASIC3.58□□□□□ -1.84
SOX4Q06945 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SOX4Q06945 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
SOX4Q06945 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX4Q06945 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX4Q06945 RNY3P5-201ENST00000384127 102 ntBASIC3.57□□□□□ -1.84
SOX4Q06945 RNY4P18-201ENST00000391107 89 ntBASIC3.57□□□□□ -1.84
SOX4Q06945 SNORA12-201ENST00000391162 147 ntBASIC3.57□□□□□ -1.84
SOX4Q06945 SNORA75.5-201ENST00000391291 81 ntBASIC3.57□□□□□ -1.84
SOX4Q06945 SNORA36B-201ENST00000410438 131 ntBASIC3.57□□□□□ -1.84
SOX4Q06945 RNU4-43P-201ENST00000410628 137 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms