Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.150-201ENST00000363562 102 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 Y_RNA.199-201ENST00000364014 102 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 RNU6-514P-201ENST00000384208 107 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 Y_RNA.785-201ENST00000384290 109 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 RNU6-1289P-201ENST00000384431 106 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 SNORA46-201ENST00000384762 135 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 MIR29B2-201ENST00000385055 81 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 MIR548B-201ENST00000385247 97 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 RN7SKP220-201ENST00000410611 288 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA4Q00056 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA4Q00056 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXA4Q00056 RNU6-182P-201ENST00000516970 105 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 RNU2-12P-201ENST00000517216 168 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.52□□□□□ -2.01
HOXA4Q00056 DEFB117-201ENST00000602356 141 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 AL713866.2-201ENST00000603579 219 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.52□□□□□ -2.01
HOXA4Q00056 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA4Q00056 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA4Q00056 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA4Q00056 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA4Q00056 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXA4Q00056 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.51□□□□□ -2.01
HOXA4Q00056 UBE2WP1-201ENST00000362030 340 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 Y_RNA.83-201ENST00000363005 113 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 RNU6-1305P-201ENST00000364353 104 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 SNORA71.1-201ENST00000364523 117 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 Y_RNA.292-201ENST00000364904 97 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 Y_RNA.329-201ENST00000365209 107 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 RNY4P28-201ENST00000365281 93 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXA4Q00056 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXA4Q00056 PRELID3BP1-201ENST00000457142 540 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 RPS29P12-201ENST00000460178 152 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 RNU6-436P-201ENST00000516171 114 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 RNU6-191P-201ENST00000516295 94 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AC245166.1-201ENST00000521012 253 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA4Q00056 MIR3199-1-201ENST00000582434 88 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AC010620.2-201ENST00000600135 313 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AC005000.2-201ENST00000605468 310 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AC011921.3-201ENST00000605540 361 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AC005828.6-201ENST00000606610 232 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AC004792.1-201ENST00000614523 137 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXA4Q00056 AC093831.2-201ENST00000624393 3427 ntBASIC2.51□□□□□ -2.01
HOXA4Q00056 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA4Q00056 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
HOXA4Q00056 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA4Q00056 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXA4Q00056 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXA4Q00056 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXA4Q00056 RNU6-545P-201ENST00000362681 104 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 SNORA68.1-201ENST00000364537 132 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 RNU4-70P-201ENST00000384579 139 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
HOXA4Q00056 RNU6-493P-201ENST00000391321 108 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 U3.40-201ENST00000408706 208 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 Y_RNA.590-201ENST00000410140 107 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 RNU2-61P-201ENST00000411069 191 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 RNU4-61P-201ENST00000411243 107 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 PIGPP3-201ENST00000425307 415 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 RPL23AP83-201ENST00000434984 473 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA4Q00056 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA4Q00056 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA4Q00056 Y_RNA.679-201ENST00000516416 91 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 RNU5F-4P-201ENST00000516581 114 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXA4Q00056 MIR4325-201ENST00000583049 90 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 MIR4282-201ENST00000583613 67 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXA4Q00056 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 AC080100.1-201ENST00000624239 5356 ntBASIC2.5□□□□□ -2.01
HOXA4Q00056 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
HOXA4Q00056 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HOXA4Q00056 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
HOXA4Q00056 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
HOXA4Q00056 Y_RNA.29-201ENST00000362570 113 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 RNU6-774P-201ENST00000363238 107 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 SNORA51.4-201ENST00000364993 124 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 SNORA44-201ENST00000384584 132 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 PCNPP3-201ENST00000393579 471 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 MIR1294-201ENST00000408503 142 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 Y_RNA.626-201ENST00000411288 95 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 MICF-203ENST00000432679 129 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
HOXA4Q00056 RNU7-14P-201ENST00000459331 62 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXA4Q00056 Y_RNA.700-201ENST00000516806 100 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 SCARNA3-201ENST00000517097 143 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 RNU6-586P-201ENST00000517265 104 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 AL133393.1-201ENST00000603277 287 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 AC006380.1-201ENST00000603598 186 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 AL033523.1-201ENST00000605153 153 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 RPL17P51-201ENST00000605218 238 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 MIR622-201ENST00000638396 96 ntBASIC2.49□□□□□ -2.01
HOXA4Q00056 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
HOXA4Q00056 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms