Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 U2.11-201ENST00000616345 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.2-201ENST00000616535 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.3-201ENST00000617785 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.19-201ENST00000618602 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNU2-1-201ENST00000618664 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.6-201ENST00000619225 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.5-201ENST00000619465 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.10-201ENST00000620268 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AC012640.5-201ENST00000623897 319 ntBASIC1.88□□□□□ -2.11
SOX3P41225 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.88□□□□□ -2.11
SOX3P41225 AC092881.1-201ENST00000638218 2733 ntBASIC1.87□□□□□ -2.11
SOX3P41225 RNU6-874P-201ENST00000362390 105 ntBASIC1.87□□□□□ -2.11
SOX3P41225 RNU6-490P-201ENST00000362985 107 ntBASIC1.87□□□□□ -2.11
SOX3P41225 Y_RNA.146-201ENST00000363549 102 ntBASIC1.87□□□□□ -2.11
SOX3P41225 SNORD31B-201ENST00000364977 69 ntBASIC1.87□□□□□ -2.11
SOX3P41225 Y_RNA.364-201ENST00000365532 101 ntBASIC1.87□□□□□ -2.11
SOX3P41225 RNU6-1040P-201ENST00000383974 107 ntBASIC1.87□□□□□ -2.11
SOX3P41225 MIR559-201ENST00000385188 96 ntBASIC1.87□□□□□ -2.11
SOX3P41225 RNA5SP213-201ENST00000391031 106 ntBASIC1.87□□□□□ -2.11
SOX3P41225 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.87□□□□□ -2.11
SOX3P41225 RNU6-1156P-201ENST00000410365 100 ntBASIC1.87□□□□□ -2.11
SOX3P41225 AC004866.1-201ENST00000411748 78 ntBASIC1.87□□□□□ -2.11
SOX3P41225 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.87□□□□□ -2.11
SOX3P41225 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.87□□□□□ -2.11
SOX3P41225 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.87□□□□□ -2.11
SOX3P41225 AC009237.7-201ENST00000447357 229 ntBASIC1.87□□□□□ -2.11
SOX3P41225 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.87□□□□□ -2.11
SOX3P41225 AP000870.1-201ENST00000472927 406 ntBASIC1.87□□□□□ -2.11
SOX3P41225 UBL5P3-201ENST00000475112 231 ntBASIC1.87□□□□□ -2.11
SOX3P41225 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.87□□□□□ -2.11
SOX3P41225 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.87□□□□□ -2.11
SOX3P41225 MIR5006-201ENST00000583027 110 ntBASIC1.87□□□□□ -2.11
SOX3P41225 CYP2C61P-201ENST00000604072 290 ntBASIC1.87□□□□□ -2.11
SOX3P41225 AL133255.1-201ENST00000606374 441 ntBASIC1.87□□□□□ -2.11
SOX3P41225 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.87□□□□□ -2.11
SOX3P41225 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SOX3P41225 MTND5P16-201ENST00000460269 1703 ntBASIC1.86□□□□□ -2.11
SOX3P41225 RNU6-694P-201ENST00000364071 147 ntBASIC1.86□□□□□ -2.11
SOX3P41225 SNORA3A-201ENST00000364113 130 ntBASIC1.86□□□□□ -2.11
SOX3P41225 RNU6-280P-201ENST00000364145 104 ntBASIC1.86□□□□□ -2.11
SOX3P41225 Y_RNA.315-201ENST00000365117 102 ntBASIC1.86□□□□□ -2.11
SOX3P41225 Y_RNA.332-201ENST00000365271 113 ntBASIC1.86□□□□□ -2.11
SOX3P41225 Y_RNA.431-201ENST00000384086 102 ntBASIC1.86□□□□□ -2.11
SOX3P41225 MIR10B-201ENST00000385011 110 ntBASIC1.86□□□□□ -2.11
SOX3P41225 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SOX3P41225 RNU1-139P-201ENST00000391307 165 ntBASIC1.86□□□□□ -2.11
SOX3P41225 AL355497.1-201ENST00000406262 551 ntBASIC1.86□□□□□ -2.11
SOX3P41225 MIR1262-201ENST00000408276 93 ntBASIC1.86□□□□□ -2.11
SOX3P41225 AC092423.1-201ENST00000430165 186 ntBASIC1.86□□□□□ -2.11
SOX3P41225 HMGN2P3-201ENST00000433603 273 ntBASIC1.86□□□□□ -2.11
SOX3P41225 HMGN2P5-201ENST00000436882 273 ntBASIC1.86□□□□□ -2.11
SOX3P41225 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.86□□□□□ -2.11
SOX3P41225 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.86□□□□□ -2.11
SOX3P41225 RNU6-991P-201ENST00000516168 107 ntBASIC1.86□□□□□ -2.11
SOX3P41225 RNU6-1153P-201ENST00000516760 105 ntBASIC1.86□□□□□ -2.11
SOX3P41225 RNA5SP490-201ENST00000517141 136 ntBASIC1.86□□□□□ -2.11
SOX3P41225 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.86□□□□□ -2.11
SOX3P41225 ANP32BP3-201ENST00000559213 706 ntBASIC1.86□□□□□ -2.11
SOX3P41225 UBL5P4-201ENST00000562584 236 ntBASIC1.86□□□□□ -2.11
SOX3P41225 MIR6715A-201ENST00000615929 79 ntBASIC1.86□□□□□ -2.11
SOX3P41225 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SOX3P41225 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
SOX3P41225 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.85□□□□□ -2.11
SOX3P41225 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.85□□□□□ -2.11
SOX3P41225 RNU1-62P-201ENST00000362599 164 ntBASIC1.85□□□□□ -2.11
SOX3P41225 Y_RNA.132-201ENST00000363421 102 ntBASIC1.85□□□□□ -2.11
SOX3P41225 RNU6-873P-201ENST00000363833 107 ntBASIC1.85□□□□□ -2.11
SOX3P41225 RNU6-281P-201ENST00000384212 103 ntBASIC1.85□□□□□ -2.11
SOX3P41225 Y_RNA.579-201ENST00000390939 94 ntBASIC1.85□□□□□ -2.11
SOX3P41225 MIR1289-2-201ENST00000408360 111 ntBASIC1.85□□□□□ -2.11
SOX3P41225 USP9YP16-201ENST00000430287 407 ntBASIC1.85□□□□□ -2.11
SOX3P41225 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.85□□□□□ -2.11
SOX3P41225 USP9YP23-201ENST00000455085 407 ntBASIC1.85□□□□□ -2.11
SOX3P41225 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.85□□□□□ -2.11
SOX3P41225 AC016925.1-201ENST00000458303 298 ntBASIC1.85□□□□□ -2.11
SOX3P41225 RNU6-1114P-201ENST00000516022 107 ntBASIC1.85□□□□□ -2.11
SOX3P41225 SNORA25.14-201ENST00000516481 132 ntBASIC1.85□□□□□ -2.11
SOX3P41225 RNU6-344P-201ENST00000516635 111 ntBASIC1.85□□□□□ -2.11
SOX3P41225 RNU6-699P-201ENST00000517081 110 ntBASIC1.85□□□□□ -2.11
SOX3P41225 AC087441.2-201ENST00000529141 262 ntBASIC1.85□□□□□ -2.11
SOX3P41225 AC090617.3-201ENST00000573670 475 ntBASIC1.85□□□□□ -2.11
SOX3P41225 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.85□□□□□ -2.11
SOX3P41225 MIR1244-1-201ENST00000612829 85 ntBASIC1.85□□□□□ -2.11
SOX3P41225 uc_338.20-201ENST00000621563 178 ntBASIC1.85□□□□□ -2.11
SOX3P41225 MIR1244-3-201ENST00000635744 85 ntBASIC1.85□□□□□ -2.11
SOX3P41225 MIR1244-2-201ENST00000636449 85 ntBASIC1.85□□□□□ -2.11
SOX3P41225 MIR1244-4-202ENST00000636813 85 ntBASIC1.85□□□□□ -2.11
SOX3P41225 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
SOX3P41225 AC073544.1-201ENST00000600110 1595 ntBASIC1.85□□□□□ -2.11
SOX3P41225 AL359851.1-201ENST00000569460 4997 ntBASIC1.85□□□□□ -2.11
SOX3P41225 RNU6-222P-201ENST00000362438 107 ntBASIC1.84□□□□□ -2.11
SOX3P41225 Y_RNA.99-201ENST00000363138 105 ntBASIC1.84□□□□□ -2.11
SOX3P41225 RNU5F-3P-201ENST00000363767 117 ntBASIC1.84□□□□□ -2.11
SOX3P41225 RNU6-438P-201ENST00000365561 103 ntBASIC1.84□□□□□ -2.11
SOX3P41225 Y_RNA.463-201ENST00000384271 102 ntBASIC1.84□□□□□ -2.11
SOX3P41225 Y_RNA.557-201ENST00000384680 107 ntBASIC1.84□□□□□ -2.11
SOX3P41225 MIR300-201ENST00000401138 83 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC123900.1-201ENST00000420390 96 ntBASIC1.84□□□□□ -2.11
SOX3P41225 EIF1P2-201ENST00000428233 350 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms