Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.99□□□□□ -1.93
MSX2P35548 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.99□□□□□ -1.93
MSX2P35548 AC012493.2-201ENST00000595083 291 ntBASIC2.99□□□□□ -1.93
MSX2P35548 AC010889.1-201ENST00000566193 2666 ntBASIC2.99□□□□□ -1.93
MSX2P35548 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
MSX2P35548 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
MSX2P35548 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.99□□□□□ -1.93
MSX2P35548 AL161431.1-201ENST00000618966 4205 ntBASIC2.98□□□□□ -1.93
MSX2P35548 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
MSX2P35548 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
MSX2P35548 Y_RNA.272-201ENST00000364696 102 ntBASIC2.98□□□□□ -1.93
MSX2P35548 RNU6-1130P-201ENST00000365434 107 ntBASIC2.98□□□□□ -1.93
MSX2P35548 MIR181B1-201ENST00000385240 110 ntBASIC2.98□□□□□ -1.93
MSX2P35548 RNU6-1248P-201ENST00000391096 64 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AL357075.1-201ENST00000404107 726 ntBASIC2.98□□□□□ -1.93
MSX2P35548 U3.40-201ENST00000408706 208 ntBASIC2.98□□□□□ -1.93
MSX2P35548 RNA5SP475-201ENST00000410568 110 ntBASIC2.98□□□□□ -1.93
MSX2P35548 RPS29P4-201ENST00000414733 161 ntBASIC2.98□□□□□ -1.93
MSX2P35548 RBMY2UP-201ENST00000453474 324 ntBASIC2.98□□□□□ -1.93
MSX2P35548 RPL31P41-201ENST00000477967 372 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AP004217.1-201ENST00000480579 346 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AC140059.1-201ENST00000489238 361 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.98□□□□□ -1.93
MSX2P35548 RN7SKP43-201ENST00000516173 320 ntBASIC2.98□□□□□ -1.93
MSX2P35548 SNORA31.26-201ENST00000517250 137 ntBASIC2.98□□□□□ -1.93
MSX2P35548 MIR2682-201ENST00000580305 110 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.98□□□□□ -1.93
MSX2P35548 AC011471.1-201ENST00000585766 187 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AL713866.2-201ENST00000603579 219 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AC096577.2-201ENST00000611455 153 ntBASIC2.98□□□□□ -1.93
MSX2P35548 uc_338.25-201ENST00000613756 156 ntBASIC2.98□□□□□ -1.93
MSX2P35548 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.98□□□□□ -1.93
MSX2P35548 AC018692.3-201ENST00000623929 123 ntBASIC2.98□□□□□ -1.93
MSX2P35548 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
MSX2P35548 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.98□□□□□ -1.93
MSX2P35548 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.97□□□□□ -1.93
MSX2P35548 SNORA51.4-201ENST00000364993 124 ntBASIC2.97□□□□□ -1.93
MSX2P35548 MIR491-201ENST00000384877 84 ntBASIC2.97□□□□□ -1.93
MSX2P35548 MIR34B-201ENST00000385076 84 ntBASIC2.97□□□□□ -1.93
MSX2P35548 BMS1P22-201ENST00000414726 313 ntBASIC2.97□□□□□ -1.93
MSX2P35548 AL135790.2-201ENST00000437701 267 ntBASIC2.97□□□□□ -1.93
MSX2P35548 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.97□□□□□ -1.93
MSX2P35548 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
MSX2P35548 RNU6-344P-201ENST00000516635 111 ntBASIC2.97□□□□□ -1.93
MSX2P35548 SNORA70.24-201ENST00000517233 118 ntBASIC2.97□□□□□ -1.93
MSX2P35548 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.97□□□□□ -1.93
MSX2P35548 EIF4A1P12-201ENST00000551910 141 ntBASIC2.97□□□□□ -1.93
MSX2P35548 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.97□□□□□ -1.93
MSX2P35548 AP001485.1-201ENST00000604799 199 ntBASIC2.97□□□□□ -1.93
MSX2P35548 AC005562.2-201ENST00000618264 111 ntBASIC2.97□□□□□ -1.93
MSX2P35548 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
MSX2P35548 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
MSX2P35548 AC108206.1-201ENST00000570186 4159 ntBASIC2.96□□□□□ -1.94
MSX2P35548 Y_RNA.7-201ENST00000362352 102 ntBASIC2.96□□□□□ -1.94
MSX2P35548 SNORD114-19-201ENST00000363072 75 ntBASIC2.96□□□□□ -1.94
MSX2P35548 Y_RNA.238-201ENST00000364441 102 ntBASIC2.96□□□□□ -1.94
MSX2P35548 SNORD87-201ENST00000364849 89 ntBASIC2.96□□□□□ -1.94
MSX2P35548 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.96□□□□□ -1.94
MSX2P35548 SNORD21-201ENST00000383953 95 ntBASIC2.96□□□□□ -1.94
MSX2P35548 RNU6-763P-201ENST00000390865 106 ntBASIC2.96□□□□□ -1.94
MSX2P35548 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.96□□□□□ -1.94
MSX2P35548 RN7SL20P-201ENST00000488827 297 ntBASIC2.96□□□□□ -1.94
MSX2P35548 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.96□□□□□ -1.94
MSX2P35548 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.96□□□□□ -1.94
MSX2P35548 MIR4276-201ENST00000584832 70 ntBASIC2.96□□□□□ -1.94
MSX2P35548 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.96□□□□□ -1.94
MSX2P35548 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.96□□□□□ -1.94
MSX2P35548 AL391813.1-201ENST00000603098 260 ntBASIC2.96□□□□□ -1.94
MSX2P35548 AC006380.1-201ENST00000603598 186 ntBASIC2.96□□□□□ -1.94
MSX2P35548 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.96□□□□□ -1.94
MSX2P35548 TCL6_2.1-201ENST00000615162 119 ntBASIC2.96□□□□□ -1.94
MSX2P35548 AL078604.3-201ENST00000615580 211 ntBASIC2.96□□□□□ -1.94
MSX2P35548 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
MSX2P35548 AL161912.2-201ENST00000565707 3007 ntBASIC2.96□□□□□ -1.94
MSX2P35548 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
MSX2P35548 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.96□□□□□ -1.94
MSX2P35548 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
MSX2P35548 RNU6-801P-201ENST00000364087 105 ntBASIC2.95□□□□□ -1.94
MSX2P35548 SNORD115-30-201ENST00000364117 82 ntBASIC2.95□□□□□ -1.94
MSX2P35548 RNU4-17P-201ENST00000365598 141 ntBASIC2.95□□□□□ -1.94
MSX2P35548 SNORD116-18-201ENST00000383961 92 ntBASIC2.95□□□□□ -1.94
MSX2P35548 Y_RNA.412-201ENST00000384001 104 ntBASIC2.95□□□□□ -1.94
MSX2P35548 SNORA9-201ENST00000384215 133 ntBASIC2.95□□□□□ -1.94
MSX2P35548 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.95□□□□□ -1.94
MSX2P35548 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.95□□□□□ -1.94
MSX2P35548 RNU2-2P-201ENST00000410396 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 AC027124.2-201ENST00000428249 105 ntBASIC2.95□□□□□ -1.94
MSX2P35548 AC004386.2-201ENST00000441858 148 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U8.19-201ENST00000459095 133 ntBASIC2.95□□□□□ -1.94
MSX2P35548 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.95□□□□□ -1.94
MSX2P35548 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.95□□□□□ -1.94
MSX2P35548 MRPS36P2-201ENST00000512569 299 ntBASIC2.95□□□□□ -1.94
MSX2P35548 RNA5SP385-201ENST00000515947 110 ntBASIC2.95□□□□□ -1.94
MSX2P35548 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.95□□□□□ -1.94
MSX2P35548 AC100767.1-201ENST00000528178 123 ntBASIC2.95□□□□□ -1.94
MSX2P35548 AC009127.3-201ENST00000570531 403 ntBASIC2.95□□□□□ -1.94
MSX2P35548 RNU2-4P-201ENST00000606190 192 ntBASIC2.95□□□□□ -1.94
MSX2P35548 SNORD11B-201ENST00000607707 90 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.15-201ENST00000611544 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.16-201ENST00000613119 191 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms