Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 MIR6788-201ENST00000618842 66 ntBASIC0.66□□□□□ -2.3
RPA3P35244 SNORD3E-202ENST00000627253 216 ntBASIC0.66□□□□□ -2.3
RPA3P35244 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.66□□□□□ -2.3
RPA3P35244 AC027514.1-201ENST00000588561 1603 ntBASIC0.66□□□□□ -2.3
RPA3P35244 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
RPA3P35244 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.65□□□□□ -2.3
RPA3P35244 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
RPA3P35244 Y_RNA.226-201ENST00000364337 114 ntBASIC0.65□□□□□ -2.31
RPA3P35244 RNU6-440P-201ENST00000390882 105 ntBASIC0.65□□□□□ -2.31
RPA3P35244 RNU6-903P-201ENST00000391270 109 ntBASIC0.65□□□□□ -2.31
RPA3P35244 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AL031577.2-201ENST00000404133 280 ntBASIC0.65□□□□□ -2.31
RPA3P35244 MIR548J-201ENST00000408833 112 ntBASIC0.65□□□□□ -2.31
RPA3P35244 RPS26P42-201ENST00000413485 326 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.65□□□□□ -2.31
RPA3P35244 CYCSP46-201ENST00000423569 204 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC133104.1-201ENST00000429100 218 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC245047.3-201ENST00000429428 127 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.65□□□□□ -2.31
RPA3P35244 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.65□□□□□ -2.31
RPA3P35244 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.65□□□□□ -2.31
RPA3P35244 RNU7-138P-201ENST00000459479 64 ntBASIC0.65□□□□□ -2.31
RPA3P35244 HMGB1P29-201ENST00000505659 499 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC025465.4-201ENST00000513422 638 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC025647.1-201ENST00000517879 253 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC090142.3-201ENST00000519012 385 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC025423.5-201ENST00000550230 219 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC022432.1-201ENST00000595739 310 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC080078.2-201ENST00000603766 501 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AP001596.2-201ENST00000608410 312 ntBASIC0.65□□□□□ -2.31
RPA3P35244 GHRLOS.1-201ENST00000610995 70 ntBASIC0.65□□□□□ -2.31
RPA3P35244 RMST_3.1-201ENST00000611651 109 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AL359075.3-201ENST00000613288 217 ntBASIC0.65□□□□□ -2.31
RPA3P35244 AC009161.2-201ENST00000624626 138 ntBASIC0.65□□□□□ -2.31
RPA3P35244 MIR605-201ENST00000385078 83 ntBASIC0.64□□□□□ -2.31
RPA3P35244 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
RPA3P35244 SNORD12-201ENST00000391002 90 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AF228730.1-201ENST00000397972 663 ntBASIC0.64□□□□□ -2.31
RPA3P35244 MIR1287-201ENST00000408492 90 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.64□□□□□ -2.31
RPA3P35244 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.64□□□□□ -2.31
RPA3P35244 RNU6-1037P-201ENST00000459571 107 ntBASIC0.64□□□□□ -2.31
RPA3P35244 SRRM1P2-201ENST00000464531 1192 ntBASIC0.64□□□□□ -2.31
RPA3P35244 RNU6-947P-201ENST00000516264 106 ntBASIC0.64□□□□□ -2.31
RPA3P35244 RNU6-759P-201ENST00000516740 103 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.64□□□□□ -2.31
RPA3P35244 AC136628.3-201ENST00000521868 290 ntBASIC0.64□□□□□ -2.31
RPA3P35244 MIR4778-201ENST00000577635 80 ntBASIC0.64□□□□□ -2.31
RPA3P35244 MIR151B-201ENST00000584249 96 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AC245884.10-201ENST00000597355 337 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AC025449.1-201ENST00000603896 529 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AC068792.1-201ENST00000621354 417 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AC139792.3-201ENST00000623525 224 ntBASIC0.64□□□□□ -2.31
RPA3P35244 AL078596.1-201ENST00000624856 447 ntBASIC0.64□□□□□ -2.31
RPA3P35244 snoZ196.1-201ENST00000625269 89 ntBASIC0.64□□□□□ -2.31
RPA3P35244 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.64□□□□□ -2.31
RPA3P35244 MTND4P5-201ENST00000435821 1374 ntBASIC0.63□□□□□ -2.31
RPA3P35244 RNU4-76P-201ENST00000364509 141 ntBASIC0.63□□□□□ -2.31
RPA3P35244 SNORA67.2-201ENST00000384300 149 ntBASIC0.63□□□□□ -2.31
RPA3P35244 MRPL42P3-201ENST00000401492 326 ntBASIC0.63□□□□□ -2.31
RPA3P35244 RPS3AP1-201ENST00000413190 320 ntBASIC0.63□□□□□ -2.31
RPA3P35244 MTATP6P19-201ENST00000413797 659 ntBASIC0.63□□□□□ -2.31
RPA3P35244 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.63□□□□□ -2.31
RPA3P35244 MIR4653-201ENST00000585107 83 ntBASIC0.63□□□□□ -2.31
RPA3P35244 AL078603.1-201ENST00000603824 313 ntBASIC0.63□□□□□ -2.31
RPA3P35244 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.63□□□□□ -2.31
RPA3P35244 AL513423.1-201ENST00000621695 132 ntBASIC0.63□□□□□ -2.31
RPA3P35244 AF246928.1-201ENST00000623768 87 ntBASIC0.63□□□□□ -2.31
RPA3P35244 AC008163.1-202ENST00000636004 2889 ntBASIC0.63□□□□□ -2.31
RPA3P35244 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
RPA3P35244 Y_RNA.123-201ENST00000363338 102 ntBASIC0.62□□□□□ -2.31
RPA3P35244 RNU6-1240P-201ENST00000365155 104 ntBASIC0.62□□□□□ -2.31
RPA3P35244 RNU6-1286P-201ENST00000383871 107 ntBASIC0.62□□□□□ -2.31
RPA3P35244 RNU6-969P-201ENST00000383900 105 ntBASIC0.62□□□□□ -2.31
RPA3P35244 SNORD41-201ENST00000386967 70 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AL355796.1-201ENST00000406706 323 ntBASIC0.62□□□□□ -2.31
RPA3P35244 RNU6-1186P-201ENST00000410429 97 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.62□□□□□ -2.31
RPA3P35244 SNRPGP9-201ENST00000456025 225 ntBASIC0.62□□□□□ -2.31
RPA3P35244 SNORD42A-201ENST00000459584 64 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC007215.1-201ENST00000464893 276 ntBASIC0.62□□□□□ -2.31
RPA3P35244 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.62□□□□□ -2.31
RPA3P35244 RNU1-117P-201ENST00000517041 158 ntBASIC0.62□□□□□ -2.31
RPA3P35244 RNU6-232P-201ENST00000517144 64 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AP003484.1-201ENST00000530974 250 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC004812.1-201ENST00000540773 146 ntBASIC0.62□□□□□ -2.31
RPA3P35244 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.62□□□□□ -2.31
RPA3P35244 HIF1AP1-201ENST00000553642 175 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AL137100.2-201ENST00000555786 315 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC004817.2-201ENST00000561794 651 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.62□□□□□ -2.31
RPA3P35244 AC068790.6-201ENST00000602558 258 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC064836.2-201ENST00000609491 462 ntBASIC0.62□□□□□ -2.31
RPA3P35244 AC068700.1-201ENST00000565862 3754 ntBASIC0.62□□□□□ -2.31
RPA3P35244 RNU6-553P-201ENST00000364047 96 ntBASIC0.61□□□□□ -2.31
RPA3P35244 RNU6-1317P-201ENST00000364582 104 ntBASIC0.61□□□□□ -2.31
RPA3P35244 MIR200A-201ENST00000384875 90 ntBASIC0.61□□□□□ -2.31
RPA3P35244 MIR487A-201ENST00000385009 80 ntBASIC0.61□□□□□ -2.31
RPA3P35244 MIR660-201ENST00000385235 97 ntBASIC0.61□□□□□ -2.31
RPA3P35244 MIR942-201ENST00000401111 86 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms