Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.97□□□□□ -2.25
COL5A3P25940 AC104576.1-201ENST00000524225 88 ntBASIC0.97□□□□□ -2.25
COL5A3P25940 AC104458.1-201ENST00000608243 463 ntBASIC0.97□□□□□ -2.25
COL5A3P25940 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
COL5A3P25940 AL121757.2-201ENST00000611223 313 ntBASIC0.97□□□□□ -2.25
COL5A3P25940 AC090517.2-201ENST00000614966 680 ntBASIC0.97□□□□□ -2.25
COL5A3P25940 AC002553.4-201ENST00000616896 331 ntBASIC0.97□□□□□ -2.25
COL5A3P25940 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
COL5A3P25940 RNU6-1010P-201ENST00000362757 107 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RNU6-944P-201ENST00000364023 107 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RNU4-12P-201ENST00000365233 139 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RNU6-546P-201ENST00000383991 107 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RNU6-939P-201ENST00000384634 107 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RNU6-908P-201ENST00000410160 94 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RNA5SP127-201ENST00000411051 133 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 AC078809.1-201ENST00000427601 140 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RPS15AP10-201ENST00000432472 382 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 AC006026.2-201ENST00000457376 180 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 MED28P2-201ENST00000475771 317 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 HMGB1P35-201ENST00000503360 598 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.96□□□□□ -2.26
COL5A3P25940 SNORA40.12-201ENST00000516329 111 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 RN7SKP256-201ENST00000517201 314 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.96□□□□□ -2.26
COL5A3P25940 MTND1P5-201ENST00000517906 940 ntBASIC0.96□□□□□ -2.26
COL5A3P25940 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.96□□□□□ -2.26
COL5A3P25940 FER-210ENST00000628534 558 ntTSL 5 BASIC0.96□□□□□ -2.26
COL5A3P25940 RNA5SP276-201ENST00000362580 94 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 Y_RNA.89-201ENST00000363031 102 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-142P-201ENST00000384019 107 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-378P-201ENST00000384324 107 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNA5SP219-201ENST00000390940 113 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 SNORA12-201ENST00000391162 147 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-510P-201ENST00000391239 108 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 EIF4E2P1-201ENST00000393781 255 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.95□□□□□ -2.26
COL5A3P25940 AC245102.2-201ENST00000448956 180 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
COL5A3P25940 AL031274.1-201ENST00000450334 232 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AK3P2-201ENST00000507976 429 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RPL39P5-202ENST00000512505 151 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 SNORA4.4-201ENST00000515921 135 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 SNORA19.2-201ENST00000516013 114 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-566P-201ENST00000516790 107 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-835P-201ENST00000516974 104 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-586P-201ENST00000517265 104 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 MRPS36P4-201ENST00000534436 298 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RRN3P3-201ENST00000549207 578 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC093249.1-201ENST00000567049 203 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 MIR4711-201ENST00000578274 70 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 MIR4713-201ENST00000582691 75 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AL022345.1-201ENST00000607292 135 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AL359314.1-201ENST00000616913 261 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC087588.2-201ENST00000617667 426 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 MIR6835-201ENST00000621552 64 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC097372.5-201ENST00000623665 376 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 Y_RNA.231-201ENST00000364358 102 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-534P-201ENST00000364877 106 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-1329P-201ENST00000365664 107 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 SNORD115-47-201ENST00000391226 86 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU2-48P-201ENST00000410694 191 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.95□□□□□ -2.26
COL5A3P25940 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.95□□□□□ -2.26
COL5A3P25940 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.95□□□□□ -2.26
COL5A3P25940 SNAP23P1-201ENST00000433229 246 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 MTCO3P18-201ENST00000440206 761 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AL353572.1-201ENST00000442490 417 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.95□□□□□ -2.26
COL5A3P25940 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.95□□□□□ -2.26
COL5A3P25940 RPS29P27-201ENST00000463711 170 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC008628.2-201ENST00000502605 298 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.95□□□□□ -2.26
COL5A3P25940 FAM206BP-201ENST00000510179 541 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 RNU6-965P-201ENST00000516721 96 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 SNORA48.11-201ENST00000517015 89 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 MTND4LP26-201ENST00000518144 282 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC022616.8-201ENST00000533569 253 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.95□□□□□ -2.26
COL5A3P25940 BNIP3P16-201ENST00000589779 534 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 CTHRC1P1-201ENST00000605383 469 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC092794.1-201ENST00000612734 582 ntBASIC0.95□□□□□ -2.26
COL5A3P25940 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.95□□□□□ -2.26
COL5A3P25940 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.94□□□□□ -2.26
COL5A3P25940 RNU6-212P-201ENST00000362642 104 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 RNU4-56P-201ENST00000364700 142 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 RNU6-336P-201ENST00000364891 107 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 SNORD116-11-201ENST00000383882 92 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 SNORD26-201ENST00000384147 75 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 RNU6-541P-201ENST00000384709 110 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.94□□□□□ -2.26
COL5A3P25940 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.94□□□□□ -2.26
COL5A3P25940 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.94□□□□□ -2.26
COL5A3P25940 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.94□□□□□ -2.26
COL5A3P25940 RNU7-187P-201ENST00000458985 68 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 U8.21-201ENST00000459536 136 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 RNU6-329P-201ENST00000459618 107 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 AC007547.1-201ENST00000462177 490 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 RPS29P25-201ENST00000481709 171 ntBASIC0.94□□□□□ -2.26
COL5A3P25940 CYCSP23-201ENST00000519781 313 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms