Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR517A-201ENST00000385001 87 ntBASIC1.86□□□□□ -2.11
BDNFP23560 AL627390.1-201ENST00000396055 340 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RPS20P15-201ENST00000412792 311 ntBASIC1.86□□□□□ -2.11
BDNFP23560 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.86□□□□□ -2.11
BDNFP23560 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.86□□□□□ -2.11
BDNFP23560 AC093534.1-201ENST00000504977 132 ntBASIC1.86□□□□□ -2.11
BDNFP23560 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.86□□□□□ -2.11
BDNFP23560 RNU6-237P-201ENST00000515985 71 ntBASIC1.86□□□□□ -2.11
BDNFP23560 SNORA25.15-201ENST00000516487 89 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RNU6-250P-201ENST00000516958 103 ntBASIC1.86□□□□□ -2.11
BDNFP23560 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.86□□□□□ -2.11
BDNFP23560 MIR4709-201ENST00000577272 72 ntBASIC1.86□□□□□ -2.11
BDNFP23560 AP001485.1-201ENST00000604799 199 ntBASIC1.86□□□□□ -2.11
BDNFP23560 AC009033.1-201ENST00000624279 431 ntBASIC1.86□□□□□ -2.11
BDNFP23560 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
BDNFP23560 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
BDNFP23560 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
BDNFP23560 SNORD50.1-201ENST00000362987 71 ntBASIC1.85□□□□□ -2.11
BDNFP23560 RNU6-623P-201ENST00000363143 105 ntBASIC1.85□□□□□ -2.11
BDNFP23560 RNU6-271P-201ENST00000363858 105 ntBASIC1.85□□□□□ -2.11
BDNFP23560 Y_RNA.319-201ENST00000365138 92 ntBASIC1.85□□□□□ -2.11
BDNFP23560 RNU6-95P-201ENST00000384697 107 ntBASIC1.85□□□□□ -2.11
BDNFP23560 MIR32-201ENST00000384965 70 ntBASIC1.85□□□□□ -2.11
BDNFP23560 RNU6-780P-201ENST00000391030 104 ntBASIC1.85□□□□□ -2.11
BDNFP23560 Z82205.1-201ENST00000428456 297 ntBASIC1.85□□□□□ -2.11
BDNFP23560 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.85□□□□□ -2.11
BDNFP23560 MTCO3P18-201ENST00000440206 761 ntBASIC1.85□□□□□ -2.11
BDNFP23560 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.85□□□□□ -2.11
BDNFP23560 NDUFB4P10-201ENST00000452541 359 ntBASIC1.85□□□□□ -2.11
BDNFP23560 AC079354.2-201ENST00000453523 154 ntBASIC1.85□□□□□ -2.11
BDNFP23560 AC105313.1-201ENST00000509121 353 ntBASIC1.85□□□□□ -2.11
BDNFP23560 AC010928.2-201ENST00000588017 287 ntBASIC1.85□□□□□ -2.11
BDNFP23560 AL161722.3-201ENST00000605789 2983 ntBASIC1.85□□□□□ -2.11
BDNFP23560 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
BDNFP23560 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.11
BDNFP23560 RNU6-1266P-201ENST00000362794 105 ntBASIC1.84□□□□□ -2.11
BDNFP23560 RNU6-1240P-201ENST00000365155 104 ntBASIC1.84□□□□□ -2.11
BDNFP23560 RNU6-1013P-201ENST00000384180 107 ntBASIC1.84□□□□□ -2.11
BDNFP23560 U8.10-201ENST00000384260 133 ntBASIC1.84□□□□□ -2.11
BDNFP23560 RNA5SP118-201ENST00000410385 109 ntBASIC1.84□□□□□ -2.11
BDNFP23560 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.84□□□□□ -2.11
BDNFP23560 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.84□□□□□ -2.11
BDNFP23560 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.84□□□□□ -2.11
BDNFP23560 RNU1-117P-201ENST00000517041 158 ntBASIC1.84□□□□□ -2.11
BDNFP23560 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.84□□□□□ -2.11
BDNFP23560 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.84□□□□□ -2.11
BDNFP23560 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.84□□□□□ -2.12
BDNFP23560 RNU6-1252P-201ENST00000363054 104 ntBASIC1.83□□□□□ -2.12
BDNFP23560 RNA5SP190-201ENST00000365222 118 ntBASIC1.83□□□□□ -2.12
BDNFP23560 RNU6-482P-201ENST00000391068 107 ntBASIC1.83□□□□□ -2.12
BDNFP23560 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.83□□□□□ -2.12
BDNFP23560 AC073910.1-201ENST00000445047 438 ntBASIC1.83□□□□□ -2.12
BDNFP23560 RPS29P23-201ENST00000458635 123 ntBASIC1.83□□□□□ -2.12
BDNFP23560 RNU6-221P-201ENST00000459541 99 ntBASIC1.83□□□□□ -2.12
BDNFP23560 RPS26P45-201ENST00000471748 340 ntBASIC1.83□□□□□ -2.12
BDNFP23560 RNU1-142P-201ENST00000516682 145 ntBASIC1.83□□□□□ -2.12
BDNFP23560 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.83□□□□□ -2.12
BDNFP23560 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.83□□□□□ -2.12
BDNFP23560 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.83□□□□□ -2.12
BDNFP23560 MIR3937-201ENST00000580135 106 ntBASIC1.83□□□□□ -2.12
BDNFP23560 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
BDNFP23560 Y_RNA.135-201ENST00000363439 95 ntBASIC1.82□□□□□ -2.12
BDNFP23560 RNU6-534P-201ENST00000364877 106 ntBASIC1.82□□□□□ -2.12
BDNFP23560 SNORD1A-201ENST00000364968 72 ntBASIC1.82□□□□□ -2.12
BDNFP23560 RNU6-332P-201ENST00000391193 108 ntBASIC1.82□□□□□ -2.12
BDNFP23560 AC004866.1-201ENST00000411748 78 ntBASIC1.82□□□□□ -2.12
BDNFP23560 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.82□□□□□ -2.12
BDNFP23560 SNORA25.14-201ENST00000516481 132 ntBASIC1.82□□□□□ -2.12
BDNFP23560 MTND1P5-201ENST00000517906 940 ntBASIC1.82□□□□□ -2.12
BDNFP23560 MIR3683-201ENST00000580847 82 ntBASIC1.82□□□□□ -2.12
BDNFP23560 AL359075.3-201ENST00000613288 217 ntBASIC1.82□□□□□ -2.12
BDNFP23560 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.82□□□□□ -2.12
BDNFP23560 Y_RNA.38-201ENST00000362617 102 ntBASIC1.81□□□□□ -2.12
BDNFP23560 U3.8-201ENST00000363675 217 ntBASIC1.81□□□□□ -2.12
BDNFP23560 RNU6-417P-201ENST00000384712 107 ntBASIC1.81□□□□□ -2.12
BDNFP23560 RNU6-997P-201ENST00000384725 107 ntBASIC1.81□□□□□ -2.12
BDNFP23560 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.81□□□□□ -2.12
BDNFP23560 MTND1P11-201ENST00000456661 876 ntBASIC1.81□□□□□ -2.12
BDNFP23560 RNU1-98P-201ENST00000458992 160 ntBASIC1.81□□□□□ -2.12
BDNFP23560 SNORD13-201ENST00000459299 104 ntBASIC1.81□□□□□ -2.12
BDNFP23560 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.81□□□□□ -2.12
BDNFP23560 RNU6-58P-201ENST00000517143 103 ntBASIC1.81□□□□□ -2.12
BDNFP23560 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.81□□□□□ -2.12
BDNFP23560 Y_RNA.212-201ENST00000364177 102 ntBASIC1.8□□□□□ -2.12
BDNFP23560 SNORA67.2-201ENST00000384300 149 ntBASIC1.8□□□□□ -2.12
BDNFP23560 MIR548B-201ENST00000385247 97 ntBASIC1.8□□□□□ -2.12
BDNFP23560 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.8□□□□□ -2.12
BDNFP23560 AC027119.1-201ENST00000440877 241 ntBASIC1.8□□□□□ -2.12
BDNFP23560 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.8□□□□□ -2.12
BDNFP23560 RNU7-34P-201ENST00000459394 64 ntBASIC1.8□□□□□ -2.12
BDNFP23560 HMGN1P12-201ENST00000499125 195 ntBASIC1.8□□□□□ -2.12
BDNFP23560 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.8□□□□□ -2.12
BDNFP23560 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.8□□□□□ -2.12
BDNFP23560 MIR4273-201ENST00000582824 84 ntBASIC1.8□□□□□ -2.12
BDNFP23560 AC012557.2-201ENST00000605919 418 ntBASIC1.8□□□□□ -2.12
BDNFP23560 MIR502-201ENST00000606349 86 ntBASIC1.8□□□□□ -2.12
BDNFP23560 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
BDNFP23560 ZNF72P-201ENST00000425869 1908 ntBASIC1.79□□□□□ -2.12
BDNFP23560 MIR302D-201ENST00000362275 68 ntBASIC1.79□□□□□ -2.12
BDNFP23560 SNORD116-11-201ENST00000383882 92 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms