Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.43□□□□□ -2.18
MSH4O15457 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.43□□□□□ -2.18
MSH4O15457 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.43□□□□□ -2.18
MSH4O15457 AC068205.3-201ENST00000636385 468 ntBASIC1.43□□□□□ -2.18
MSH4O15457 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
MSH4O15457 RNU6-1252P-201ENST00000363054 104 ntBASIC1.42□□□□□ -2.18
MSH4O15457 RNU6-392P-201ENST00000364926 101 ntBASIC1.42□□□□□ -2.18
MSH4O15457 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.42□□□□□ -2.18
MSH4O15457 MTCO3P8-201ENST00000453691 755 ntBASIC1.42□□□□□ -2.18
MSH4O15457 snoU13.30-201ENST00000458951 104 ntBASIC1.42□□□□□ -2.18
MSH4O15457 RNU7-187P-201ENST00000458985 68 ntBASIC1.42□□□□□ -2.18
MSH4O15457 HMGN1P13-201ENST00000505795 138 ntBASIC1.42□□□□□ -2.18
MSH4O15457 AC067942.3-201ENST00000512025 362 ntBASIC1.42□□□□□ -2.18
MSH4O15457 RNU6-970P-201ENST00000516312 107 ntBASIC1.42□□□□□ -2.18
MSH4O15457 MTND1P35-201ENST00000526739 508 ntBASIC1.42□□□□□ -2.18
MSH4O15457 ZNF519P2-201ENST00000557032 169 ntBASIC1.42□□□□□ -2.18
MSH4O15457 AL133215.3-201ENST00000609801 448 ntBASIC1.42□□□□□ -2.18
MSH4O15457 AL359697.1-201ENST00000624879 587 ntBASIC1.42□□□□□ -2.18
MSH4O15457 RNU1-62P-201ENST00000362599 164 ntBASIC1.41□□□□□ -2.18
MSH4O15457 RNU6-414P-201ENST00000363705 104 ntBASIC1.41□□□□□ -2.18
MSH4O15457 RNU1-96P-201ENST00000364163 162 ntBASIC1.41□□□□□ -2.18
MSH4O15457 RNU6-338P-201ENST00000383888 105 ntBASIC1.41□□□□□ -2.18
MSH4O15457 RNU6-1215P-201ENST00000384441 102 ntBASIC1.41□□□□□ -2.18
MSH4O15457 RNU6-790P-201ENST00000384479 105 ntBASIC1.41□□□□□ -2.18
MSH4O15457 MIR520A-201ENST00000384862 85 ntBASIC1.41□□□□□ -2.18
MSH4O15457 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
MSH4O15457 RNU2-7P-201ENST00000410794 178 ntBASIC1.41□□□□□ -2.18
MSH4O15457 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.41□□□□□ -2.18
MSH4O15457 UBE2V1P8-201ENST00000437166 265 ntBASIC1.41□□□□□ -2.18
MSH4O15457 AC009237.7-201ENST00000447357 229 ntBASIC1.41□□□□□ -2.18
MSH4O15457 HMGN2P26-201ENST00000463169 339 ntBASIC1.41□□□□□ -2.18
MSH4O15457 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.41□□□□□ -2.18
MSH4O15457 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.41□□□□□ -2.18
MSH4O15457 MIR7974-201ENST00000615835 79 ntBASIC1.41□□□□□ -2.18
MSH4O15457 AC139792.2-201ENST00000624218 587 ntBASIC1.41□□□□□ -2.18
MSH4O15457 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.41□□□□□ -2.18
MSH4O15457 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
MSH4O15457 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.18
MSH4O15457 AC010615.1-201ENST00000594254 1764 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RNU6-451P-201ENST00000362921 107 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RNY3P3-201ENST00000363816 102 ntBASIC1.4□□□□□ -2.19
MSH4O15457 Y_RNA.226-201ENST00000364337 114 ntBASIC1.4□□□□□ -2.19
MSH4O15457 Y_RNA.256-201ENST00000364594 104 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RNU4-12P-201ENST00000365233 139 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RNU6-332P-201ENST00000391193 108 ntBASIC1.4□□□□□ -2.19
MSH4O15457 MIR548F1-201ENST00000408667 84 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RNU6-955P-201ENST00000410497 104 ntBASIC1.4□□□□□ -2.19
MSH4O15457 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH4O15457 EBAG9P1-201ENST00000418955 543 ntBASIC1.4□□□□□ -2.19
MSH4O15457 AC060773.1-201ENST00000421698 310 ntBASIC1.4□□□□□ -2.19
MSH4O15457 AC245047.4-201ENST00000433189 144 ntBASIC1.4□□□□□ -2.19
MSH4O15457 AL353572.1-201ENST00000442490 417 ntBASIC1.4□□□□□ -2.19
MSH4O15457 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH4O15457 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH4O15457 AC011406.1-201ENST00000512440 370 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RNU2-34P-201ENST00000516534 121 ntBASIC1.4□□□□□ -2.19
MSH4O15457 RRN3P3-201ENST00000549207 578 ntBASIC1.4□□□□□ -2.19
MSH4O15457 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH4O15457 TPRKBP2-201ENST00000565969 475 ntBASIC1.4□□□□□ -2.19
MSH4O15457 EIF1P4-201ENST00000572664 335 ntBASIC1.4□□□□□ -2.19
MSH4O15457 SNRPGP20-201ENST00000604477 205 ntBASIC1.4□□□□□ -2.19
MSH4O15457 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.4□□□□□ -2.19
MSH4O15457 SCARNA4-201ENST00000629045 128 ntBASIC1.4□□□□□ -2.19
MSH4O15457 MIR1321-201ENST00000637766 79 ntBASIC1.4□□□□□ -2.19
MSH4O15457 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
MSH4O15457 BX322639.1-202ENST00000423987 2213 ntBASIC1.39□□□□□ -2.19
MSH4O15457 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
MSH4O15457 MTND4P5-201ENST00000435821 1374 ntBASIC1.39□□□□□ -2.19
MSH4O15457 Y_RNA.151-201ENST00000363566 112 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RNU6-1019P-201ENST00000364424 107 ntBASIC1.39□□□□□ -2.19
MSH4O15457 SNORD115-47-201ENST00000391226 86 ntBASIC1.39□□□□□ -2.19
MSH4O15457 MIR1267-201ENST00000408723 78 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC004866.1-201ENST00000411748 78 ntBASIC1.39□□□□□ -2.19
MSH4O15457 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.39□□□□□ -2.19
MSH4O15457 HSPE1P9-201ENST00000440046 311 ntBASIC1.39□□□□□ -2.19
MSH4O15457 NFU1P2-201ENST00000448700 469 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC016717.1-201ENST00000448918 286 ntBASIC1.39□□□□□ -2.19
MSH4O15457 PCMTD1P1-201ENST00000455560 355 ntBASIC1.39□□□□□ -2.19
MSH4O15457 snoU13.9-201ENST00000458927 103 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC007215.1-201ENST00000464893 276 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC114982.1-201ENST00000469402 321 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC092989.1-201ENST00000481235 277 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RPL36AP21-201ENST00000490372 323 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RPL23AP75-201ENST00000491601 451 ntBASIC1.39□□□□□ -2.19
MSH4O15457 TRBVA-201ENST00000498804 316 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RNU6-718P-201ENST00000516166 105 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RNU6-948P-201ENST00000516374 107 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RNA5SP384-201ENST00000516615 116 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RNA5SP437-201ENST00000517249 129 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC073413.2-201ENST00000604332 360 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.39□□□□□ -2.19
MSH4O15457 AC126177.8-201ENST00000618339 1015 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC137590.2-201ENST00000619709 240 ntBASIC1.39□□□□□ -2.19
MSH4O15457 AC024614.3-201ENST00000637860 256 ntBASIC1.39□□□□□ -2.19
MSH4O15457 RNU6-1305P-201ENST00000364353 104 ntBASIC1.38□□□□□ -2.19
MSH4O15457 RNU6-53P-201ENST00000365367 106 ntBASIC1.38□□□□□ -2.19
MSH4O15457 Y_RNA.530-201ENST00000384587 101 ntBASIC1.38□□□□□ -2.19
MSH4O15457 RNU6-95P-201ENST00000384697 107 ntBASIC1.38□□□□□ -2.19
MSH4O15457 MIR487A-201ENST00000385009 80 ntBASIC1.38□□□□□ -2.19
MSH4O15457 AL117342.1-201ENST00000404861 406 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms