Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 RN7SKP49-201ENST00000516675 260 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 SCOCP1-201ENST00000554676 349 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 MIR4424-201ENST00000585257 86 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 AC080078.3-201ENST00000605407 463 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 AC097065.2-201ENST00000608159 533 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 AC024933.1-201ENST00000608472 348 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 MIR8070-201ENST00000616510 88 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 MIR8054-201ENST00000620877 86 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 AL078596.1-201ENST00000624856 447 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 SCARNA4-201ENST00000629045 128 ntBASIC0.71□□□□□ -2.3
RBFOX3A6NFN3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 SNORD114-2-201ENST00000363953 78 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 RNU6-996P-201ENST00000365438 107 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 RNU6-505P-201ENST00000384427 107 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 SNORA26.8-201ENST00000391306 124 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 MIR320B2-201ENST00000408479 138 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 RNU7-63P-201ENST00000459054 62 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AF186996.7-201ENST00000492781 209 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC103851.1-201ENST00000506833 274 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 RNA5SP102-201ENST00000516865 106 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC087854.1-201ENST00000519706 414 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC004584.2-201ENST00000570407 410 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC008088.1-201ENST00000580993 280 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC064836.2-201ENST00000609491 462 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 AC068792.1-201ENST00000621354 417 ntBASIC0.7□□□□□ -2.3
RBFOX3A6NFN3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 SNORD114-27-201ENST00000363766 70 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 RNU6-1240P-201ENST00000365155 104 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 MIR499A-201ENST00000384903 122 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 RNU6-910P-201ENST00000390844 107 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 SNORA12.1-201ENST00000390873 148 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 AC063976.4-201ENST00000421971 163 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 MTCO2P18-201ENST00000457151 658 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 MTCO3P38-201ENST00000468910 766 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 RNU6-430P-201ENST00000517078 107 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 MTCO2P4-201ENST00000517968 247 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 Z94722.1-201ENST00000604328 474 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 GHRLOS.1-201ENST00000610995 70 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 RMST_3.1-201ENST00000611651 109 ntBASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
RBFOX3A6NFN3 Y_RNA.123-201ENST00000363338 102 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNU6-82P-201ENST00000363970 107 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNU6-1317P-201ENST00000364582 104 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 SNORD114-24-201ENST00000365029 72 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNU6-1329P-201ENST00000365664 107 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 MRPL42P3-201ENST00000401492 326 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AL049545.1-201ENST00000401856 572 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AL034345.1-201ENST00000407768 123 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNA5SP247-201ENST00000411181 105 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AC245047.3-201ENST00000429428 127 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AL358934.1-201ENST00000432346 324 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AL031667.1-201ENST00000440222 725 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AC245047.7-201ENST00000440265 293 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RPS4XP11-201ENST00000446897 772 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AC105758.1-201ENST00000506038 399 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNU6-351P-201ENST00000516097 100 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNU6-189P-201ENST00000516120 101 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNA5SP168-201ENST00000516642 112 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 RNU7-128P-201ENST00000517247 62 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 MRPS36P4-201ENST00000534436 298 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AC211469.2-201ENST00000605461 205 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 MIR6504-201ENST00000613520 61 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AC103705.1-201ENST00000619013 241 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 AC137590.2-201ENST00000619709 240 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 FER-210ENST00000628534 558 ntTSL 5 BASIC0.68□□□□□ -2.3
RBFOX3A6NFN3 Y_RNA.191-201ENST00000363972 113 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 Y_RNA.224-201ENST00000364308 111 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 MIR660-201ENST00000385235 97 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 RNU6-440P-201ENST00000390882 105 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 MIR1287-201ENST00000408492 90 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 MTND1P27-201ENST00000451117 902 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 AC048334.1-201ENST00000477975 159 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 SNORD79.1-201ENST00000516069 84 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 ACA64.5-201ENST00000516207 127 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 RN7SKP287-201ENST00000516546 266 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 RNU6-922P-201ENST00000516753 99 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 CBX3P8-201ENST00000532412 525 ntBASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.67□□□□□ -2.3
RBFOX3A6NFN3 MIR4653-201ENST00000585107 83 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms