Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MRPL35P1-201ENST00000404272 572 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 RPEP5-201ENST00000441137 268 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 MTATP8P1-201ENST00000467115 207 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 AC067942.3-201ENST00000512025 362 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 Y_RNA.713-201ENST00000517013 96 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-586P-201ENST00000517265 104 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 AC018630.3-201ENST00000542637 96 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 AC005562.2-201ENST00000618264 111 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 AC090517.3-201ENST00000625170 141 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 RNA5SP361-201ENST00000362686 118 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-1274P-201ENST00000384557 107 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-1109P-201ENST00000391187 107 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AL359511.1-201ENST00000402970 211 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 Y_RNA.597-201ENST00000410463 100 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC007395.1-201ENST00000451333 677 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC090515.1-201ENST00000465295 476 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 MRPS35P2-201ENST00000508242 191 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC008413.1-201ENST00000511864 177 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 MTCO2P24-201ENST00000515611 426 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 HSPE1P18-201ENST00000517602 280 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC090517.1-201ENST00000569307 266 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AL356280.1-201ENST00000603614 379 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AC240442.1-201ENST00000616055 283 ntBASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
PCDHA1Q9Y5I3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.84□□□□□ -1.96
PCDHA1Q9Y5I3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
PCDHA1Q9Y5I3 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.179-201ENST00000363844 90 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 SET-203ENST00000372688 801 ntTSL 2 BASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 MIR592-201ENST00000384959 97 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 MIR549A-201ENST00000385268 96 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 SNORA12-201ENST00000391162 147 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 SNORD12B-201ENST00000410433 91 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-1001P-201ENST00000411265 100 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 AC027124.2-201ENST00000428249 105 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 AL445305.1-201ENST00000432577 575 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 AC104389.3-201ENST00000445629 235 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 CYP2C59P-201ENST00000457790 269 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 AC008269.2-201ENST00000561915 1105 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 RAC1P9-201ENST00000604990 392 ntBASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.83□□□□□ -1.96
PCDHA1Q9Y5I3 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.176-201ENST00000363815 109 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.183-201ENST00000363882 113 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.210-201ENST00000364161 110 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.214-201ENST00000364201 112 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-793P-201ENST00000384233 104 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 MIR627-201ENST00000384979 97 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-220P-201ENST00000390919 107 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 RPL21P1-201ENST00000399532 476 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 MTCYBP9-201ENST00000431021 303 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 AL161788.1-201ENST00000441805 169 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 AC010095.1-201ENST00000443543 144 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.683-201ENST00000516508 93 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-344P-201ENST00000516635 111 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 RNU2-44P-201ENST00000516795 194 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-897P-201ENST00000517135 105 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 DEFB131C-201ENST00000528817 165 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 AC091544.4-201ENST00000555268 342 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 MIR4659A-201ENST00000580269 81 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.772-201ENST00000606692 102 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 AL590808.1-201ENST00000618696 141 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 MIR6733-201ENST00000635723 61 ntBASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.82□□□□□ -1.96
PCDHA1Q9Y5I3 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 Z82209.1-201ENST00000422141 2135 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 AC080100.1-201ENST00000624239 5356 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RNA5SP289-201ENST00000362332 137 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.149-201ENST00000363558 117 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-944P-201ENST00000364023 107 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RNA5SP240-201ENST00000365355 128 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 SNORA18.2-201ENST00000383865 132 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-26P-201ENST00000383985 107 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 FO393413.1-201ENST00000402892 195 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 MIR1294-201ENST00000408503 142 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.595-201ENST00000410403 105 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-130P-201ENST00000411112 103 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 AC003685.2-201ENST00000422795 395 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 AC004386.2-201ENST00000441858 148 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms