Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 RNA5SP239-201ENST00000410218 129 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AC007560.1-201ENST00000426912 237 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 Z82210.1-201ENST00000440037 231 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 SNORD108-201ENST00000459332 71 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AC073901.1-201ENST00000462471 408 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AK6P2-201ENST00000549020 471 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AC103996.1-201ENST00000555468 102 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 MED28P6-201ENST00000558776 231 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 RPL23AP78-201ENST00000599928 470 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 AC027309.3-201ENST00000623419 351 ntBASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL17A1Q9UMD9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 U3.15-201ENST00000365398 212 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 RNU6-629P-201ENST00000384061 103 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 AL117339.3-201ENST00000418733 162 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 WARS2P1-201ENST00000429678 537 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 POLR2KP2-201ENST00000438155 177 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 NDUFS5P3-201ENST00000450668 321 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 HMGN2P23-201ENST00000456759 269 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 AC006026.2-201ENST00000457376 180 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 RNU7-175P-201ENST00000515915 61 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 Y_RNA.685-201ENST00000516532 108 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 MIR4431-201ENST00000579990 94 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 MIR4423-201ENST00000580922 80 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 CTSLP2-204ENST00000629029 392 ntBASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL17A1Q9UMD9 SNORA40.19-201ENST00000390846 128 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 RNU2-68P-201ENST00000410878 191 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 Z85995.1-201ENST00000415547 335 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AIMP1P2-201ENST00000425294 312 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AL078601.1-201ENST00000444542 271 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 Y_RNA.651-201ENST00000459380 103 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 TOMM22P6-201ENST00000465035 409 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 SNORA31.19-201ENST00000517079 126 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 RPL23AP88-201ENST00000605759 454 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 PWAR6-201ENST00000552334 4618 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 RNU6-222P-201ENST00000362438 107 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 RNU6-235P-201ENST00000362644 107 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 RNU6-227P-201ENST00000362865 103 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 RNU6-318P-201ENST00000384283 103 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AL591034.1-201ENST00000407447 340 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AL158823.1-201ENST00000418441 478 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AC062037.1-201ENST00000605302 128 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 AC005046.1-201ENST00000608515 625 ntBASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.24□□□□□ -1.73
COL17A1Q9UMD9 U3.6-201ENST00000363622 211 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 RNU4-17P-201ENST00000365598 141 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 SNORA40.5-201ENST00000391061 128 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 SNORA40C-201ENST00000391285 128 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 AC016700.2-201ENST00000446011 156 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 AC092991.1-201ENST00000477176 376 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 AC107027.2-201ENST00000512197 115 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 SNORA64.4-201ENST00000516632 81 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 AC006001.4-201ENST00000622243 395 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 SCARNA4-202ENST00000625402 129 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 MIR3914-2-201ENST00000637339 95 ntBASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL17A1Q9UMD9 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 Y_RNA.35-201ENST00000362601 101 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 RNU6-626P-201ENST00000363354 107 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 RNU6-1131P-201ENST00000364955 107 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 RNU6-968P-201ENST00000384076 107 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 RNU6-905P-201ENST00000384434 107 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 SNORD37.2-201ENST00000391075 66 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 BTF3L4P2-201ENST00000392798 346 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 AC245291.1-201ENST00000419501 328 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 Z82188.1-201ENST00000436709 154 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 AL031737.1-201ENST00000450125 223 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 SNRPGP5-201ENST00000456003 220 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms