Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 XGY1-201ENST00000381172 446 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.405-201ENST00000383979 100 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.451-201ENST00000384200 100 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.460-201ENST00000384255 102 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.524-201ENST00000384564 100 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.561-201ENST00000384694 100 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.579-201ENST00000390939 94 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 SNORA12.2-201ENST00000391040 156 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 MIR320B2-201ENST00000408479 138 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC004866.1-201ENST00000411748 78 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC123900.1-201ENST00000420390 96 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 ELOCP24-201ENST00000456370 334 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC016925.1-201ENST00000458303 298 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 HMGN1P13-201ENST00000505795 138 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 RNU6-58P-201ENST00000517143 103 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC104581.2-201ENST00000572227 430 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 MIR5089-201ENST00000580047 84 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 MIR3935-201ENST00000583472 104 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC044792.1-201ENST00000593294 196 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC126177.8-201ENST00000618339 1015 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 MIR6852-201ENST00000621699 66 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 AC090574.1-201ENST00000623186 233 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 IGHVIII-44-202ENST00000636235 289 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.22□□□□□ -2.05
LIMA1Q9UHB6 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.138-201ENST00000363462 102 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 SNORD42.2-201ENST00000365570 69 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 RNU6-160P-201ENST00000384591 107 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 AL354751.2-201ENST00000415471 210 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 BX510359.4-201ENST00000423750 193 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 AC007677.1-201ENST00000445757 515 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 AC009237.7-201ENST00000447357 229 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 RNU6-120P-201ENST00000516077 103 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 SCARNA16.2-201ENST00000516520 172 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.701-201ENST00000516812 110 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 RNU6-1198P-201ENST00000516904 67 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 AC005899.2-201ENST00000584353 90 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 AC007229.1-201ENST00000590455 412 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LIMA1Q9UHB6 RNY1P16-201ENST00000363063 111 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 SNORA16B-201ENST00000364674 135 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 RNU6-890P-201ENST00000384121 107 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 RNU6-541P-201ENST00000384709 110 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 RNU6-331P-201ENST00000384724 107 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AL023284.1-201ENST00000403956 276 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 MIR1283-2-201ENST00000408621 87 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AL353997.1-201ENST00000432936 108 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AC236972.2-201ENST00000434979 310 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.653-201ENST00000459091 95 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 RNU6-307P-201ENST00000516743 106 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.706-201ENST00000516933 99 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AC087441.2-201ENST00000529141 262 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 MIR5701-3-201ENST00000578890 82 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 MIR5701-1-201ENST00000585138 82 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AC078899.2-201ENST00000595282 212 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 AC100812.1-201ENST00000607622 580 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 MIR5701-2-201ENST00000615634 82 ntBASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
LIMA1Q9UHB6 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AP006437.1-201ENST00000641440 3685 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RNU1-58P-201ENST00000362413 163 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RNU6-545P-201ENST00000362681 104 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RNU6-137P-201ENST00000363680 108 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RNU6-245P-201ENST00000384020 107 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RNA5SP465-201ENST00000391195 109 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 SUMO2P12-201ENST00000405924 140 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RNA5SP450-201ENST00000411206 102 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 MTCO2P27-201ENST00000420740 428 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 RPL30P15-201ENST00000457129 321 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AC097473.1-201ENST00000508142 408 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AC093303.1-201ENST00000514549 295 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AP000889.1-201ENST00000530968 660 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 MIR5690-201ENST00000583739 73 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AL355802.3-201ENST00000607571 545 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AC130454.1-201ENST00000622948 401 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 LINC02555-201ENST00000563933 1951 ntBASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
LIMA1Q9UHB6 ZNF658B-202ENST00000615961 3375 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 MIR340-201ENST00000362125 95 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 RNU4-82P-201ENST00000362443 140 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.132-201ENST00000363421 102 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 Y_RNA.187-201ENST00000363918 113 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 SNORA75.6-201ENST00000391318 127 ntBASIC2.18□□□□□ -2.06
LIMA1Q9UHB6 MIR300-201ENST00000401138 83 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms