Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SNORA48.3-201ENST00000391081 134 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 SNORD23.1-201ENST00000408212 104 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 AC004866.1-201ENST00000411748 78 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 USMG5P1-201ENST00000425964 177 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 AL035666.1-201ENST00000446195 348 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 MTND5P20-201ENST00000448677 143 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 AC016925.1-201ENST00000458303 298 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 snoU13.30-201ENST00000458951 104 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 TOMM22P6-201ENST00000465035 409 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.76□□□□□ -2.13
LIME1Q9H400 RNU6-875P-201ENST00000516488 106 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 RNA5SP490-201ENST00000517141 136 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.76□□□□□ -2.13
LIME1Q9H400 SNRPGP19-201ENST00000603826 189 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 AC113139.1-201ENST00000605049 239 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 AL132765.2-201ENST00000610812 351 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LIME1Q9H400 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.76□□□□□ -2.13
LIME1Q9H400 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
LIME1Q9H400 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
LIME1Q9H400 RNU6-1164P-201ENST00000364428 107 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 SNORD31B-201ENST00000364977 69 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 MIR518A2-201ENST00000384966 87 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 MIR153-2-201ENST00000385225 87 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 AC019129.1-201ENST00000403786 261 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 MIR1283-2-201ENST00000408621 87 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.75□□□□□ -2.13
LIME1Q9H400 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.75□□□□□ -2.13
LIME1Q9H400 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.75□□□□□ -2.13
LIME1Q9H400 AC009237.7-201ENST00000447357 229 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 HMGN2P18-201ENST00000450680 270 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.75□□□□□ -2.13
LIME1Q9H400 Y_RNA.702-201ENST00000516843 96 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 RNU2-19P-201ENST00000517288 84 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 AL590705.4-201ENST00000532209 134 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 AC121758.2-201ENST00000553271 193 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.75□□□□□ -2.13
LIME1Q9H400 MIR4273-201ENST00000582824 84 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 AC025253.1-201ENST00000613623 543 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 TCL6_2.1-201ENST00000615162 119 ntBASIC1.75□□□□□ -2.13
LIME1Q9H400 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.74□□□□□ -2.13
LIME1Q9H400 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
LIME1Q9H400 AC092881.1-201ENST00000638218 2733 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 Y_RNA.118-201ENST00000363300 101 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNU6-1188P-201ENST00000363795 107 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNU6-457P-201ENST00000363999 107 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 Y_RNA.263-201ENST00000364659 114 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNU6-245P-201ENST00000384020 107 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 SNORA75.4-201ENST00000391278 119 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 AL445685.2-201ENST00000422551 342 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.74□□□□□ -2.13
LIME1Q9H400 MTCO3P29-201ENST00000432119 779 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.74□□□□□ -2.13
LIME1Q9H400 AC055731.1-201ENST00000474387 401 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RPL7P42-201ENST00000481005 679 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNA5SP384-201ENST00000516615 116 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNU1-40P-201ENST00000516816 164 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNU1-97P-201ENST00000516872 164 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 RNA5SP54-201ENST00000516951 92 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 APOOP3-201ENST00000536787 586 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.74□□□□□ -2.13
LIME1Q9H400 MIR4529-201ENST00000578110 78 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 AC243960.4-201ENST00000600532 288 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 LARP7P1-201ENST00000605576 316 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.74□□□□□ -2.13
LIME1Q9H400 AL669831.3-213ENST00000636676 183 ntBASIC1.74□□□□□ -2.13
LIME1Q9H400 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.74□□□□□ -2.13
LIME1Q9H400 MIR378A-201ENST00000362177 66 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 RNU6-743P-201ENST00000364151 106 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 Y_RNA.319-201ENST00000365138 92 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 MIR32-201ENST00000384965 70 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 SNORA12.2-201ENST00000391040 156 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AL355497.1-201ENST00000406262 551 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 U3.40-201ENST00000408706 208 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 RNU6-370P-201ENST00000411008 104 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AC123900.1-201ENST00000420390 96 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AC027124.2-201ENST00000428249 105 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AC003989.2-201ENST00000440224 169 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AC245102.2-201ENST00000448956 180 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 RNU5F-4P-201ENST00000516581 114 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 RNU6-58P-201ENST00000517143 103 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.73□□□□□ -2.13
LIME1Q9H400 snoU13.31-201ENST00000607291 104 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 AC008873.1-201ENST00000625051 138 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 MIR203B-201ENST00000636080 86 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 MTND4P1-201ENST00000457501 1466 ntBASIC1.73□□□□□ -2.13
LIME1Q9H400 Y_RNA.70-201ENST00000362886 110 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 SNORA16B-201ENST00000364674 135 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 Y_RNA.269-201ENST00000364685 89 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNU4-52P-201ENST00000384209 138 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNU6-1009P-201ENST00000390996 107 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNA5SP465-201ENST00000391195 109 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNA5SP450-201ENST00000411206 102 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 156.6 ms