Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AL161670.1-201ENST00000554348 137 ntBASIC1.43□□□□□ -2.18
SCN2AQ99250 AL096840.1-201ENST00000603287 93 ntBASIC1.43□□□□□ -2.18
SCN2AQ99250 AL138726.1-201ENST00000614873 333 ntBASIC1.43□□□□□ -2.18
SCN2AQ99250 AC008555.8-201ENST00000623602 2168 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 CBX3P1-201ENST00000325243 554 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN2AQ99250 RNU6-790P-201ENST00000384479 105 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 C8orf59P1-201ENST00000429930 303 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 AL353572.1-201ENST00000442490 417 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 ATP5J2P3-201ENST00000451550 258 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 NDUFB4P10-201ENST00000452541 359 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN2AQ99250 AC016925.1-201ENST00000458303 298 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 AC082651.2-201ENST00000496833 166 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 TRMT112P2-201ENST00000512910 132 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 AF235103.2-201ENST00000525753 346 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 AC018638.8-201ENST00000588755 281 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 AL078605.1-201ENST00000603529 500 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 RNU6-1188P-201ENST00000363795 107 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 RNU6-60P-201ENST00000364792 103 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 SNORD48-201ENST00000364953 64 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 SNORA29-201ENST00000384183 140 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN2AQ99250 RNA5SP137-201ENST00000516833 135 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN2AQ99250 AC137590.2-201ENST00000619709 240 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.42□□□□□ -2.18
SCN2AQ99250 SNORA43.4-201ENST00000629559 138 ntBASIC1.42□□□□□ -2.18
SCN2AQ99250 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SCN2AQ99250 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SCN2AQ99250 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN2AQ99250 Y_RNA.212-201ENST00000364177 102 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 RNU6-601P-201ENST00000384540 107 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 RNU6-1274P-201ENST00000384557 107 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 MIR1276-201ENST00000408707 83 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 RNU2-41P-201ENST00000410991 178 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 RPL37P10-201ENST00000412884 288 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AC007098.1-201ENST00000420122 367 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 SNRPGP13-201ENST00000442212 177 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AL357134.1-201ENST00000445848 426 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN2AQ99250 AL121594.1-201ENST00000475906 575 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 HMGN1P12-201ENST00000499125 195 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AC027288.2-201ENST00000553028 243 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AC124303.1-201ENST00000605703 360 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AC019193.3-201ENST00000609144 554 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 PCGEM1.1-201ENST00000613431 131 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
SCN2AQ99250 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.41□□□□□ -2.18
SCN2AQ99250 MIR6128-201ENST00000615528 109 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AC098657.3-201ENST00000620434 263 ntBASIC1.41□□□□□ -2.18
SCN2AQ99250 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN2AQ99250 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
SCN2AQ99250 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
SCN2AQ99250 RNU6-862P-201ENST00000362804 105 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 RNA5SP493-201ENST00000364115 91 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 AC139712.2-201ENST00000424302 339 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN2AQ99250 AC068781.1-201ENST00000488231 618 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 AC116353.2-201ENST00000505332 712 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 RNU6-1146P-201ENST00000516282 102 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 RNU6-911P-201ENST00000516523 104 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 UBL5P4-201ENST00000562584 236 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN2AQ99250 AC093913.1-201ENST00000614178 329 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 AC006026.1-201ENST00000444025 1803 ntBASIC1.4□□□□□ -2.18
SCN2AQ99250 ZNF204P-201ENST00000416749 2397 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 RNU6-1252P-201ENST00000363054 104 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 RNU5F-3P-201ENST00000363767 117 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 RNU6-17P-201ENST00000384245 107 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 RNU6-18P-201ENST00000384527 107 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 MIR521-1-201ENST00000384902 87 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 AC074085.1-201ENST00000413598 418 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 AC069257.2-201ENST00000441819 155 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN2AQ99250 AC090821.2-201ENST00000523552 176 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN2AQ99250 SUB1P4-201ENST00000566062 339 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 MIR3122-201ENST00000577243 73 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 7SK.7-201ENST00000603504 247 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 MIR1248-201ENST00000629190 106 ntBASIC1.4□□□□□ -2.19
SCN2AQ99250 Y_RNA.123-201ENST00000363338 102 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 Y_RNA.248-201ENST00000364501 109 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 SNORD31B-201ENST00000364977 69 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 SNORA25B-201ENST00000365507 128 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SCN2AQ99250 SNORD116-11-201ENST00000383882 92 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 RNU6-1235P-201ENST00000384559 107 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 Y_RNA.615-201ENST00000410769 117 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 MTND4LP16-201ENST00000440828 295 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 RNU6-498P-201ENST00000459468 107 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 FO393415.2-201ENST00000480085 343 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.39□□□□□ -2.19
SCN2AQ99250 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SCN2AQ99250 RNU6-1016P-201ENST00000516689 94 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN2AQ99250 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN2AQ99250 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN2AQ99250 SNRPGP20-201ENST00000604477 205 ntBASIC1.39□□□□□ -2.19
SCN2AQ99250 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms