Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC025465.4-201ENST00000513422 638 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-277P-201ENST00000516272 106 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.691-201ENST00000516611 103 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 RNU7-30P-201ENST00000516835 62 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC110588.1-201ENST00000559699 137 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AL357078.3-201ENST00000607528 618 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 MIR6845-201ENST00000613182 61 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC245060.5-201ENST00000610778 3293 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 MTND5P9-201ENST00000503854 1755 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.70-201ENST00000362886 110 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-112P-201ENST00000363599 104 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 U3.9-201ENST00000363823 204 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNA5SP99-201ENST00000364020 114 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-336P-201ENST00000364891 107 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 SNORA12-201ENST00000391162 147 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RPS29P13-201ENST00000402041 169 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNU4-14P-201ENST00000410858 122 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RPS3AP52-201ENST00000435639 297 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNU1-98P-201ENST00000458992 160 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RPL36AP21-201ENST00000490372 323 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 TRBVA-201ENST00000498804 316 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC103851.1-201ENST00000506833 274 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 MIR449C-201ENST00000516047 92 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-1332P-201ENST00000516666 104 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC104576.1-201ENST00000524225 88 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC103996.1-201ENST00000555468 102 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC100830.2-201ENST00000581636 240 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 UBE2V2P2-201ENST00000587677 504 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AC011712.1-201ENST00000588959 234 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 AL161722.3-201ENST00000605789 2983 ntBASIC1.61□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-867P-201ENST00000364956 107 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-827P-201ENST00000365553 106 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 SNORD116-11-201ENST00000383882 92 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-439P-201ENST00000384188 106 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 MIR548K-201ENST00000408406 116 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 MTND5P20-201ENST00000448677 143 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 RNU7-187P-201ENST00000458985 68 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 RPS29P27-201ENST00000463711 170 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 MTND4P17-201ENST00000470444 350 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 MTND5P5-201ENST00000503764 376 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC016632.1-201ENST00000503994 196 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC097473.1-201ENST00000508142 408 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC046134.1-201ENST00000514454 666 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.702-201ENST00000516843 96 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 RNA5SP454-201ENST00000517231 127 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC087854.1-201ENST00000519706 414 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 HSPE1P4-201ENST00000550617 308 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC109446.1-201ENST00000566172 220 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 MIR5094-201ENST00000578766 85 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 POLR3GP2-201ENST00000588366 668 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AL117336.2-201ENST00000602435 335 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 AC104260.1-201ENST00000616660 539 ntBASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
ZNF540Q8NDQ6 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 RNU2-41P-201ENST00000410991 178 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 AC009161.1-201ENST00000417306 376 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 SNAP23P1-201ENST00000433229 246 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 SNRPEP8-201ENST00000442866 260 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 MTND3P10-201ENST00000450967 341 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 RNA5SP445-201ENST00000515889 115 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-566P-201ENST00000516790 107 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-273P-201ENST00000516937 96 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 AC105029.1-201ENST00000520250 669 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 RAB11AP2-201ENST00000545905 639 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 CPDP1-201ENST00000579660 283 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 AL132765.2-201ENST00000610812 351 ntBASIC1.59□□□□□ -2.15
ZNF540Q8NDQ6 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
ZNF540Q8NDQ6 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 SNORD33-201ENST00000362761 85 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 SNORD32A-201ENST00000364805 84 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 RNU5E-4P-201ENST00000364931 120 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-128P-201ENST00000383976 107 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-692P-201ENST00000384496 107 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 MIR520A-201ENST00000384862 85 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-510P-201ENST00000391239 108 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 MIR548F5-201ENST00000408421 86 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 MTCO2P3-201ENST00000442543 421 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 AL031274.1-201ENST00000450334 232 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 HSPE1P24-201ENST00000450782 238 ntBASIC1.58□□□□□ -2.16
ZNF540Q8NDQ6 RPS29P23-201ENST00000458635 123 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms