Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
ATG4DQ86TL0 CEP170P1-201ENST00000502249 4587 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
ATG4DQ86TL0 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.34□□□□□ -1.87
ATG4DQ86TL0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.34□□□□□ -1.87
ATG4DQ86TL0 RNU6-600P-201ENST00000362524 99 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 Y_RNA.40-201ENST00000362645 93 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 RNU6-529P-201ENST00000363383 104 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 RNU6-283P-201ENST00000364788 107 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 SNORD18B-201ENST00000365659 72 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 RNU6-1080P-201ENST00000383982 107 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 RNU6-49P-201ENST00000384256 107 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 SNORA67.2-201ENST00000384300 149 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 SNORA72-201ENST00000384339 132 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 MIRLET7F2-201ENST00000385277 83 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 AC093578.1-201ENST00000415219 368 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.34□□□□□ -1.87
ATG4DQ86TL0 AL365496.1-201ENST00000426885 215 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 HMGN2P32-201ENST00000444648 269 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 Z75741.1-201ENST00000446793 314 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 AL358232.1-201ENST00000448030 501 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 EIF4A1P12-201ENST00000551910 141 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 AC027176.1-201ENST00000560204 514 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
ATG4DQ86TL0 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
ATG4DQ86TL0 AL513302.2-201ENST00000562313 1842 ntBASIC3.34□□□□□ -1.87
ATG4DQ86TL0 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
ATG4DQ86TL0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.88
ATG4DQ86TL0 AC069528.2-201ENST00000624849 1991 ntBASIC3.34□□□□□ -1.88
ATG4DQ86TL0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
ATG4DQ86TL0 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
ATG4DQ86TL0 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
ATG4DQ86TL0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
ATG4DQ86TL0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 AP001486.2-201ENST00000561652 5113 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 MTND5P18-201ENST00000445624 1801 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 Y_RNA.346-201ENST00000365385 112 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 RNU6-484P-201ENST00000384016 107 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 PTMAP5-201ENST00000393073 333 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 AL603914.1-201ENST00000401964 204 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 AL139281.1-201ENST00000422120 335 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 HMGN2P7-201ENST00000456186 273 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 SNORD108-201ENST00000459332 71 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 AC006445.2-201ENST00000510061 472 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 RNU6-1337P-201ENST00000516525 95 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 RNU6-928P-201ENST00000516876 104 ntBASIC3.33□□□□□ -1.88
ATG4DQ86TL0 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
ATG4DQ86TL0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 TNPO1P3-201ENST00000436471 2662 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 RNU4-15P-201ENST00000362613 141 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 U3.8-201ENST00000363675 217 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 Y_RNA.432-201ENST00000384087 111 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 SNORA5A-201ENST00000384111 134 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 RNU6-136P-201ENST00000384663 107 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 RPL23AP54-201ENST00000495129 419 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 RNU1-95P-201ENST00000516357 160 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 RNU1-128P-201ENST00000516704 160 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 AC105137.2-201ENST00000569073 466 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 POLR3GP1-201ENST00000594073 261 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 AL049861.1-201ENST00000603130 150 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 AP003357.1-201ENST00000604497 148 ntBASIC3.32□□□□□ -1.88
ATG4DQ86TL0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4DQ86TL0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 MIR208A-201ENST00000362287 71 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 RNU4-41P-201ENST00000364426 143 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 MIR200C-201ENST00000384980 68 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 SNORD72-201ENST00000390994 80 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 CYCSP48-201ENST00000417124 323 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 AC006989.1-201ENST00000427212 131 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 RMST_8.1-201ENST00000610287 165 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 AL138880.2-201ENST00000616214 239 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 AP001318.4-201ENST00000616637 121 ntBASIC3.31□□□□□ -1.88
ATG4DQ86TL0 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
ATG4DQ86TL0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ATG4DQ86TL0 RNA5SP42-201ENST00000364278 115 ntBASIC3.3□□□□□ -1.88
ATG4DQ86TL0 RNU6-1107P-201ENST00000364817 104 ntBASIC3.3□□□□□ -1.88
ATG4DQ86TL0 SNORA51.10-201ENST00000384418 136 ntBASIC3.3□□□□□ -1.88
ATG4DQ86TL0 Z98941.1-201ENST00000407764 100 ntBASIC3.3□□□□□ -1.88
ATG4DQ86TL0 RN7SKP101-201ENST00000411376 320 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms