Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL357312.1-201ENST00000603879 298 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AP001836.1-201ENST00000604675 523 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AL031775.1-201ENST00000607014 887 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AL359075.3-201ENST00000613288 217 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AC005562.2-201ENST00000618264 111 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.12□□□□□ -2.39
FOXA3P55318 AC013437.2-201ENST00000639587 677 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
FOXA3P55318 MTND5P16-201ENST00000460269 1703 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 RNU6-1327P-201ENST00000365302 105 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 RNU6-550P-201ENST00000391057 101 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 RNU6-1000P-201ENST00000391066 106 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 RNU6-387P-201ENST00000411331 105 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.11□□□□□ -2.39
FOXA3P55318 AL162725.1-201ENST00000435405 301 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 U7.7-201ENST00000459276 60 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 MTCO2P29-201ENST00000465212 189 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.11□□□□□ -2.39
FOXA3P55318 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.11□□□□□ -2.39
FOXA3P55318 AC234772.3-201ENST00000602277 528 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 AL096861.1-201ENST00000610899 123 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.11□□□□□ -2.39
FOXA3P55318 AC104010.1-201ENST00000616889 150 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 AL136221.1-201ENST00000621449 509 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.11□□□□□ -2.39
FOXA3P55318 AC027514.1-201ENST00000588561 1603 ntBASIC0.11□□□□□ -2.39
FOXA3P55318 RNU6-1287P-201ENST00000362914 107 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 Y_RNA.224-201ENST00000364308 111 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 SNORA2.2-201ENST00000365473 135 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 RNU6-1060P-201ENST00000384664 107 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 SNORD115.1-201ENST00000391109 76 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC004866.1-201ENST00000411748 78 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 MTCO2P21-201ENST00000419780 677 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC244098.3-201ENST00000424803 96 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.1□□□□□ -2.39
FOXA3P55318 RPL23AP50-201ENST00000434149 455 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC104332.1-201ENST00000440471 797 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 STAG3L5P-204ENST00000443759 179 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 EXOSC3P1-201ENST00000448649 500 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.1□□□□□ -2.39
FOXA3P55318 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.1□□□□□ -2.39
FOXA3P55318 MTCO3P8-201ENST00000453691 755 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC245047.8-201ENST00000456455 284 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 TPT1P7-201ENST00000458300 517 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 LINC01399-202ENST00000458450 244 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC108740.1-201ENST00000498629 225 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.1□□□□□ -2.39
FOXA3P55318 SCARNA24.1-201ENST00000516465 137 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC105185.1-201ENST00000518705 535 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC087854.1-201ENST00000519706 414 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC022616.3-201ENST00000523940 148 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC131055.1-201ENST00000584626 316 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.1□□□□□ -2.39
FOXA3P55318 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 TCL6_2.1-201ENST00000615162 119 ntBASIC0.1□□□□□ -2.39
FOXA3P55318 RNU6-931P-201ENST00000363850 107 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 MIR216A-201ENST00000385063 110 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 CALM2P4-201ENST00000430810 426 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 SNRPGP9-201ENST00000456025 225 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 OR9P1P-201ENST00000496431 281 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.09□□□□□ -2.4
FOXA3P55318 AC025647.1-201ENST00000517879 253 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 AC106038.2-201ENST00000520706 568 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 RNU6-323P-201ENST00000521915 107 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.09□□□□□ -2.4
FOXA3P55318 AC109810.1-201ENST00000534066 224 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 AC016957.1-201ENST00000534895 309 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.09□□□□□ -2.4
FOXA3P55318 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.09□□□□□ -2.4
FOXA3P55318 AP000907.4-201ENST00000604143 237 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 AL031667.3-201ENST00000620124 655 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 AC068792.1-201ENST00000621354 417 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 AC011155.2-201ENST00000623202 216 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 U6.114-201ENST00000636407 96 ntBASIC0.09□□□□□ -2.4
FOXA3P55318 Y_RNA.18-201ENST00000362461 102 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 RNU4-92P-201ENST00000363783 136 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 RNY1P12-201ENST00000364251 105 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 RNU6-1240P-201ENST00000365155 104 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
FOXA3P55318 RNU6-157P-201ENST00000383957 107 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 RNU6-342P-201ENST00000384521 104 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 U8.16-201ENST00000391279 133 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 MTND3P17-201ENST00000416968 344 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AC106883.1-201ENST00000418805 562 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.08□□□□□ -2.4
FOXA3P55318 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.08□□□□□ -2.4
FOXA3P55318 MTCO2P23-201ENST00000425216 680 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.08□□□□□ -2.4
FOXA3P55318 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.08□□□□□ -2.4
FOXA3P55318 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.08□□□□□ -2.4
FOXA3P55318 RNA5SP436-201ENST00000516020 115 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 RNU7-128P-201ENST00000517247 62 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AP003168.1-201ENST00000530091 307 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 MTND1P15-201ENST00000579262 949 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 MIR3192-201ENST00000584920 77 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.08□□□□□ -2.4
FOXA3P55318 AL078603.1-201ENST00000603824 313 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AC092354.1-201ENST00000606057 376 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AC002044.1-201ENST00000606707 158 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms