Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-1322P-201ENST00000364309 107 ntBASIC1.38□□□□□ -2.19
MSH6P52701 SNORD31B-201ENST00000364977 69 ntBASIC1.38□□□□□ -2.19
MSH6P52701 RNU6-438P-201ENST00000365561 103 ntBASIC1.38□□□□□ -2.19
MSH6P52701 Y_RNA.378-201ENST00000365652 113 ntBASIC1.38□□□□□ -2.19
MSH6P52701 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.38□□□□□ -2.19
MSH6P52701 SNORA32.2-201ENST00000384049 122 ntBASIC1.38□□□□□ -2.19
MSH6P52701 Y_RNA.481-201ENST00000384373 102 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.38□□□□□ -2.19
MSH6P52701 RNU7-14P-201ENST00000459331 62 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AC010409.1-201ENST00000487382 476 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AC021146.2-201ENST00000504736 556 ntBASIC1.38□□□□□ -2.19
MSH6P52701 RPL39P5-202ENST00000512505 151 ntBASIC1.38□□□□□ -2.19
MSH6P52701 RNA5SP401-201ENST00000515920 127 ntBASIC1.38□□□□□ -2.19
MSH6P52701 RNU6-612P-201ENST00000516909 102 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AC016256.1-201ENST00000547971 354 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.38□□□□□ -2.19
MSH6P52701 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.38□□□□□ -2.19
MSH6P52701 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AC097520.1-201ENST00000624435 385 ntBASIC1.38□□□□□ -2.19
MSH6P52701 AC009541.1-201ENST00000438279 2662 ntBASIC1.38□□□□□ -2.19
MSH6P52701 MTND5P26-201ENST00000426018 1752 ntBASIC1.38□□□□□ -2.19
MSH6P52701 MTND5P9-201ENST00000503854 1755 ntBASIC1.38□□□□□ -2.19
MSH6P52701 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.38□□□□□ -2.19
MSH6P52701 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
MSH6P52701 RNU6-227P-201ENST00000362865 103 ntBASIC1.37□□□□□ -2.19
MSH6P52701 RNU1-76P-201ENST00000362903 159 ntBASIC1.37□□□□□ -2.19
MSH6P52701 RNU4-66P-201ENST00000365199 138 ntBASIC1.37□□□□□ -2.19
MSH6P52701 RNU6-1329P-201ENST00000365664 107 ntBASIC1.37□□□□□ -2.19
MSH6P52701 SNORA69-201ENST00000383895 132 ntBASIC1.37□□□□□ -2.19
MSH6P52701 Y_RNA.409-201ENST00000383990 98 ntBASIC1.37□□□□□ -2.19
MSH6P52701 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
MSH6P52701 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
MSH6P52701 NCOR1P3-201ENST00000420479 303 ntBASIC1.37□□□□□ -2.19
MSH6P52701 AC139712.2-201ENST00000424302 339 ntBASIC1.37□□□□□ -2.19
MSH6P52701 SDAD1P3-201ENST00000427380 333 ntBASIC1.37□□□□□ -2.19
MSH6P52701 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.37□□□□□ -2.19
MSH6P52701 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.37□□□□□ -2.19
MSH6P52701 MTCO1P44-201ENST00000441935 243 ntBASIC1.37□□□□□ -2.19
MSH6P52701 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.37□□□□□ -2.19
MSH6P52701 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.37□□□□□ -2.19
MSH6P52701 RPS23P5-201ENST00000495419 428 ntBASIC1.37□□□□□ -2.19
MSH6P52701 AC025465.4-201ENST00000513422 638 ntBASIC1.37□□□□□ -2.19
MSH6P52701 RN7SKP179-201ENST00000516126 217 ntBASIC1.37□□□□□ -2.19
MSH6P52701 RNU5F-4P-201ENST00000516581 114 ntBASIC1.37□□□□□ -2.19
MSH6P52701 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.37□□□□□ -2.19
MSH6P52701 MTND1P15-201ENST00000579262 949 ntBASIC1.37□□□□□ -2.19
MSH6P52701 MIR3611-201ENST00000584484 83 ntBASIC1.37□□□□□ -2.19
MSH6P52701 MIR5692C1-201ENST00000585309 91 ntBASIC1.37□□□□□ -2.19
MSH6P52701 Z99129.1-201ENST00000612510 255 ntBASIC1.37□□□□□ -2.19
MSH6P52701 AL442644.1-201ENST00000454390 3105 ntBASIC1.37□□□□□ -2.19
MSH6P52701 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
MSH6P52701 Y_RNA.115-201ENST00000363272 98 ntBASIC1.36□□□□□ -2.19
MSH6P52701 Y_RNA.167-201ENST00000363735 109 ntBASIC1.36□□□□□ -2.19
MSH6P52701 RNU6-259P-201ENST00000383999 107 ntBASIC1.36□□□□□ -2.19
MSH6P52701 RNU6-1042P-201ENST00000384204 107 ntBASIC1.36□□□□□ -2.19
MSH6P52701 MIR208B-201ENST00000401172 77 ntBASIC1.36□□□□□ -2.19
MSH6P52701 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.36□□□□□ -2.19
MSH6P52701 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.36□□□□□ -2.19
MSH6P52701 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.36□□□□□ -2.19
MSH6P52701 AC016925.1-201ENST00000458303 298 ntBASIC1.36□□□□□ -2.19
MSH6P52701 RPL9P9-202ENST00000466501 579 ntBASIC1.36□□□□□ -2.19
MSH6P52701 Y_RNA.681-201ENST00000516445 113 ntBASIC1.36□□□□□ -2.19
MSH6P52701 RNU6-835P-201ENST00000516974 104 ntBASIC1.36□□□□□ -2.19
MSH6P52701 SNORA44.1-201ENST00000517031 108 ntBASIC1.36□□□□□ -2.19
MSH6P52701 AC090517.1-201ENST00000569307 266 ntBASIC1.36□□□□□ -2.19
MSH6P52701 AC092747.3-201ENST00000603769 301 ntBASIC1.36□□□□□ -2.19
MSH6P52701 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.36□□□□□ -2.19
MSH6P52701 AC108706.1-201ENST00000611053 297 ntBASIC1.36□□□□□ -2.19
MSH6P52701 AC124864.2-201ENST00000624736 186 ntBASIC1.36□□□□□ -2.19
MSH6P52701 MIR6863-201ENST00000636112 90 ntBASIC1.36□□□□□ -2.19
MSH6P52701 RNU6-112P-201ENST00000363599 104 ntBASIC1.35□□□□□ -2.19
MSH6P52701 RNU4-20P-201ENST00000365601 151 ntBASIC1.35□□□□□ -2.19
MSH6P52701 MIR513A1-201ENST00000385138 129 ntBASIC1.35□□□□□ -2.19
MSH6P52701 RNU6-1093P-201ENST00000391194 107 ntBASIC1.35□□□□□ -2.19
MSH6P52701 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
MSH6P52701 RNU2-66P-201ENST00000410650 161 ntBASIC1.35□□□□□ -2.19
MSH6P52701 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.35□□□□□ -2.19
MSH6P52701 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.35□□□□□ -2.19
MSH6P52701 MTND3P16-201ENST00000452205 344 ntBASIC1.35□□□□□ -2.19
MSH6P52701 SRRM1P2-201ENST00000464531 1192 ntBASIC1.35□□□□□ -2.19
MSH6P52701 RPL31P58-201ENST00000469001 379 ntBASIC1.35□□□□□ -2.19
MSH6P52701 Y_RNA.654-201ENST00000497848 106 ntBASIC1.35□□□□□ -2.19
MSH6P52701 AC097473.1-201ENST00000508142 408 ntBASIC1.35□□□□□ -2.19
MSH6P52701 FAM206BP-201ENST00000510179 541 ntBASIC1.35□□□□□ -2.19
MSH6P52701 SNORA31.17-201ENST00000516953 127 ntBASIC1.35□□□□□ -2.19
MSH6P52701 SCOCP1-201ENST00000554676 349 ntBASIC1.35□□□□□ -2.19
MSH6P52701 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.35□□□□□ -2.19
MSH6P52701 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.35□□□□□ -2.19
MSH6P52701 AL357078.3-201ENST00000607528 618 ntBASIC1.35□□□□□ -2.19
MSH6P52701 AL121757.2-201ENST00000611223 313 ntBASIC1.35□□□□□ -2.19
MSH6P52701 SNORA29-201ENST00000384183 140 ntBASIC1.34□□□□□ -2.19
MSH6P52701 MIR30A-201ENST00000385092 71 ntBASIC1.34□□□□□ -2.19
MSH6P52701 SNORD37.1-201ENST00000390968 65 ntBASIC1.34□□□□□ -2.19
MSH6P52701 RNU11-5P-201ENST00000391216 129 ntBASIC1.34□□□□□ -2.19
MSH6P52701 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
MSH6P52701 RNU6-648P-201ENST00000410190 107 ntBASIC1.34□□□□□ -2.19
MSH6P52701 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH6P52701 USP9YP14-201ENST00000430663 563 ntBASIC1.34□□□□□ -2.19
MSH6P52701 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH6P52701 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms