Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC138915.1-201ENST00000565427 1685 ntBASIC3.32□□□□□ -1.88
MRE11P49959 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.32□□□□□ -1.88
MRE11P49959 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
MRE11P49959 RNU4-90P-201ENST00000362773 141 ntBASIC3.31□□□□□ -1.88
MRE11P49959 RNU1-105P-201ENST00000363470 161 ntBASIC3.31□□□□□ -1.88
MRE11P49959 Y_RNA.297-201ENST00000364950 91 ntBASIC3.31□□□□□ -1.88
MRE11P49959 MIR512-1-201ENST00000384913 84 ntBASIC3.31□□□□□ -1.88
MRE11P49959 SNORD67-201ENST00000390833 111 ntBASIC3.31□□□□□ -1.88
MRE11P49959 RNU6-1001P-201ENST00000411265 100 ntBASIC3.31□□□□□ -1.88
MRE11P49959 AC078809.1-201ENST00000427601 140 ntBASIC3.31□□□□□ -1.88
MRE11P49959 MTND2P29-201ENST00000438595 412 ntBASIC3.31□□□□□ -1.88
MRE11P49959 AC105272.1-201ENST00000438604 198 ntBASIC3.31□□□□□ -1.88
MRE11P49959 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.31□□□□□ -1.88
MRE11P49959 RPL26P26-201ENST00000480251 434 ntBASIC3.31□□□□□ -1.88
MRE11P49959 RN7SKP132-201ENST00000516001 208 ntBASIC3.31□□□□□ -1.88
MRE11P49959 ACA59.2-201ENST00000517061 156 ntBASIC3.31□□□□□ -1.88
MRE11P49959 RNU6-58P-201ENST00000517143 103 ntBASIC3.31□□□□□ -1.88
MRE11P49959 MIR4643-201ENST00000577473 78 ntBASIC3.31□□□□□ -1.88
MRE11P49959 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.31□□□□□ -1.88
MRE11P49959 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.31□□□□□ -1.88
MRE11P49959 HMGN2P15-201ENST00000585707 270 ntBASIC3.31□□□□□ -1.88
MRE11P49959 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.31□□□□□ -1.88
MRE11P49959 AC000403.1-201ENST00000613696 3585 ntBASIC3.31□□□□□ -1.88
MRE11P49959 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
MRE11P49959 AC092268.1-201ENST00000342691 405 ntBASIC3.3□□□□□ -1.88
MRE11P49959 Y_RNA.29-201ENST00000362570 113 ntBASIC3.3□□□□□ -1.88
MRE11P49959 SNORD115-8-201ENST00000363856 82 ntBASIC3.3□□□□□ -1.88
MRE11P49959 SNORD115-38-201ENST00000365037 82 ntBASIC3.3□□□□□ -1.88
MRE11P49959 RNU6-622P-201ENST00000384272 103 ntBASIC3.3□□□□□ -1.88
MRE11P49959 Y_RNA.508-201ENST00000384502 114 ntBASIC3.3□□□□□ -1.88
MRE11P49959 MIR764-201ENST00000390811 85 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AL139156.1-201ENST00000412785 841 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.3□□□□□ -1.88
MRE11P49959 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.3□□□□□ -1.88
MRE11P49959 AL591806.2-201ENST00000433122 173 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AC244670.1-201ENST00000436879 112 ntBASIC3.3□□□□□ -1.88
MRE11P49959 RPL23AP58-201ENST00000440453 469 ntBASIC3.3□□□□□ -1.88
MRE11P49959 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.3□□□□□ -1.88
MRE11P49959 AC010099.1-201ENST00000455434 375 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.3□□□□□ -1.88
MRE11P49959 SNORA31.21-201ENST00000517180 77 ntBASIC3.3□□□□□ -1.88
MRE11P49959 RN7SKP40-201ENST00000517211 242 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AC090897.2-201ENST00000581715 130 ntBASIC3.3□□□□□ -1.88
MRE11P49959 MIR3605-201ENST00000583214 100 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AL138963.2-201ENST00000605137 226 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.3□□□□□ -1.88
MRE11P49959 AC127459.3-201ENST00000624328 466 ntBASIC3.3□□□□□ -1.88
MRE11P49959 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.3□□□□□ -1.88
MRE11P49959 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
MRE11P49959 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.29□□□□□ -1.88
MRE11P49959 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
MRE11P49959 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.29□□□□□ -1.88
MRE11P49959 RBBP8P1-201ENST00000449447 1844 ntBASIC3.29□□□□□ -1.88
MRE11P49959 RNU6-1285P-201ENST00000363480 105 ntBASIC3.29□□□□□ -1.88
MRE11P49959 RNA5SP99-201ENST00000364020 114 ntBASIC3.29□□□□□ -1.88
MRE11P49959 Y_RNA.286-201ENST00000364813 102 ntBASIC3.29□□□□□ -1.88
MRE11P49959 RNU6-487P-201ENST00000365430 104 ntBASIC3.29□□□□□ -1.88
MRE11P49959 Y_RNA.555-201ENST00000384673 110 ntBASIC3.29□□□□□ -1.88
MRE11P49959 MIR329-1-201ENST00000385028 80 ntBASIC3.29□□□□□ -1.88
MRE11P49959 SNORA26.3-201ENST00000391119 136 ntBASIC3.29□□□□□ -1.88
MRE11P49959 RNA5SP390-201ENST00000410191 113 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AL358075.3-201ENST00000426289 226 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AL445305.1-201ENST00000432577 575 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.29□□□□□ -1.88
MRE11P49959 RPL39P29-201ENST00000447779 157 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AC012308.1-201ENST00000451232 178 ntBASIC3.29□□□□□ -1.88
MRE11P49959 PRELID3BP1-201ENST00000457142 540 ntBASIC3.29□□□□□ -1.88
MRE11P49959 snoU13.6-201ENST00000458785 104 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.29□□□□□ -1.88
MRE11P49959 RNU5F-8P-201ENST00000515941 111 ntBASIC3.29□□□□□ -1.88
MRE11P49959 RNA5SP458-201ENST00000516188 119 ntBASIC3.29□□□□□ -1.88
MRE11P49959 RNA5SP24-201ENST00000516478 95 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AC021231.3-201ENST00000558497 370 ntBASIC3.29□□□□□ -1.88
MRE11P49959 MIR4423-201ENST00000580922 80 ntBASIC3.29□□□□□ -1.88
MRE11P49959 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.29□□□□□ -1.88
MRE11P49959 SNORD113-5-201ENST00000607261 78 ntBASIC3.29□□□□□ -1.88
MRE11P49959 FTX_2.1-201ENST00000618816 94 ntBASIC3.29□□□□□ -1.88
MRE11P49959 AC064859.1-201ENST00000624741 174 ntBASIC3.29□□□□□ -1.88
MRE11P49959 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
MRE11P49959 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.29□□□□□ -1.88
MRE11P49959 Y_RNA.200-201ENST00000364018 102 ntBASIC3.28□□□□□ -1.88
MRE11P49959 DEFA7P-201ENST00000382676 285 ntBASIC3.28□□□□□ -1.88
MRE11P49959 RNU6-1145P-201ENST00000384246 107 ntBASIC3.28□□□□□ -1.88
MRE11P49959 RNU4-30P-201ENST00000410245 143 ntBASIC3.28□□□□□ -1.88
MRE11P49959 RNU5A-5P-201ENST00000411054 116 ntBASIC3.28□□□□□ -1.88
MRE11P49959 AC022018.1-201ENST00000430685 241 ntBASIC3.28□□□□□ -1.88
MRE11P49959 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.28□□□□□ -1.88
MRE11P49959 AC073901.1-201ENST00000462471 408 ntBASIC3.28□□□□□ -1.88
MRE11P49959 RPL30P12-201ENST00000474666 353 ntBASIC3.28□□□□□ -1.88
MRE11P49959 SEPT14P8-201ENST00000508026 178 ntBASIC3.28□□□□□ -1.88
MRE11P49959 RNU6-1198P-201ENST00000516904 67 ntBASIC3.28□□□□□ -1.88
MRE11P49959 AK6P2-201ENST00000549020 471 ntBASIC3.28□□□□□ -1.88
MRE11P49959 AC004792.1-201ENST00000614523 137 ntBASIC3.28□□□□□ -1.88
MRE11P49959 MIR3199-2-201ENST00000636243 86 ntBASIC3.28□□□□□ -1.88
MRE11P49959 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.28□□□□□ -1.88
MRE11P49959 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.28□□□□□ -1.88
MRE11P49959 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.28□□□□□ -1.89
MRE11P49959 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MRE11P49959 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MRE11P49959 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms