Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
PTPN9P43378 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
PTPN9P43378 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
PTPN9P43378 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.39□□□□□ -2.03
PTPN9P43378 RNA5SP289-201ENST00000362332 137 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 RNU1-23P-201ENST00000363361 144 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 Y_RNA.202-201ENST00000364083 110 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 Y_RNA.358-201ENST00000365491 99 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 Y_RNA.557-201ENST00000384680 107 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
PTPN9P43378 Y_RNA.605-201ENST00000410577 105 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.39□□□□□ -2.03
PTPN9P43378 AC009237.7-201ENST00000447357 229 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.39□□□□□ -2.03
PTPN9P43378 AL163540.1-201ENST00000485382 386 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 SNORA25.10-201ENST00000515926 124 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 RNU4-77P-201ENST00000516692 156 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 RNU6-1153P-201ENST00000516760 105 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.39□□□□□ -2.03
PTPN9P43378 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.39□□□□□ -2.03
PTPN9P43378 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.39□□□□□ -2.03
PTPN9P43378 AC083806.3-201ENST00000614016 455 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 AL132822.1-201ENST00000617063 513 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 U2.1-201ENST00000618978 145 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 ZNF204P-201ENST00000416749 2397 ntBASIC2.39□□□□□ -2.03
PTPN9P43378 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
PTPN9P43378 MIR449A-201ENST00000362113 91 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 RNU6-222P-201ENST00000362438 107 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 Y_RNA.31-201ENST00000362574 102 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 RNU6-873P-201ENST00000363833 107 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 RNU6-234P-201ENST00000365229 104 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 RNU6-281P-201ENST00000384212 103 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 RNU6-611P-201ENST00000384276 104 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 MIR487A-201ENST00000385009 80 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
PTPN9P43378 RNU2-48P-201ENST00000410694 191 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 MTCO3P19-201ENST00000415864 321 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 AC093852.1-201ENST00000503587 266 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.38□□□□□ -2.03
PTPN9P43378 AC107222.1-201ENST00000510899 637 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 CYCSP23-201ENST00000519781 313 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 DEFB131C-201ENST00000528817 165 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 CBX3P7-201ENST00000532876 502 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 AC006157.1-201ENST00000611750 366 ntBASIC2.38□□□□□ -2.03
PTPN9P43378 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
PTPN9P43378 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
PTPN9P43378 RNU4-82P-201ENST00000362443 140 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 SNORA63-201ENST00000363450 132 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 Y_RNA.148-201ENST00000363557 117 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 SNORA18.2-201ENST00000383865 132 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 RNY3P4-201ENST00000384428 101 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 Y_RNA.526-201ENST00000384572 110 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 AC027124.2-201ENST00000428249 105 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 WARS2P1-201ENST00000429678 537 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.37□□□□□ -2.03
PTPN9P43378 AC007395.1-201ENST00000451333 677 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 AC112492.4-201ENST00000456549 352 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 RNU7-87P-201ENST00000459343 62 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 AC107032.1-201ENST00000485945 480 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 AC018868.1-201ENST00000491307 315 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 RPS23P5-201ENST00000495419 428 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.37□□□□□ -2.03
PTPN9P43378 NDUFA5P6-201ENST00000542110 379 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 AP002770.2-201ENST00000543613 532 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 AL442163.3-201ENST00000554110 156 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.37□□□□□ -2.03
PTPN9P43378 AC005296.1-201ENST00000616145 209 ntBASIC2.37□□□□□ -2.03
PTPN9P43378 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
PTPN9P43378 AC005592.1-201ENST00000566527 1640 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 SNORA25B-201ENST00000365507 128 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 SNORA22B-201ENST00000383876 138 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 MIR628-201ENST00000385229 95 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.36□□□□□ -2.03
PTPN9P43378 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.36□□□□□ -2.03
PTPN9P43378 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 AC004386.2-201ENST00000441858 148 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 AC009238.1-201ENST00000442165 424 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 AC009237.6-201ENST00000446969 424 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 CHEK2P4-201ENST00000450340 246 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 MTCO3P8-201ENST00000453691 755 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 SNORA25.14-201ENST00000516481 132 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 RNA5SP281-201ENST00000516504 135 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 RN7SKP49-201ENST00000516675 260 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 RNU2-44P-201ENST00000516795 194 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.36□□□□□ -2.03
PTPN9P43378 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.36□□□□□ -2.03
PTPN9P43378 UBL5P4-201ENST00000562584 236 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 AC125232.2-201ENST00000592457 143 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 Y_RNA.812-201ENST00000610788 101 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 Y_RNA.784-201ENST00000613803 101 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 Y_RNA.787-201ENST00000616522 101 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 AC007485.1-201ENST00000616755 206 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 Y_RNA.780-201ENST00000617336 101 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 Y_RNA.801-201ENST00000619005 101 ntBASIC2.36□□□□□ -2.03
PTPN9P43378 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
PTPN9P43378 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.36□□□□□ -2.03
PTPN9P43378 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.35□□□□□ -2.03
PTPN9P43378 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
PTPN9P43378 Y_RNA.27-201ENST00000362540 103 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms