Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.8□□□□□ -2.28
COL18A1P39060 AC016256.1-201ENST00000547971 354 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 MIR3908-201ENST00000579798 126 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 NIFKP6-201ENST00000598115 845 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC002044.1-201ENST00000606707 158 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC027449.1-201ENST00000608890 407 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 SNORA72.3-201ENST00000365074 132 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 RNU6-877P-201ENST00000383868 107 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 RNU6-1065P-201ENST00000384513 106 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC090960.1-201ENST00000421072 306 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.8□□□□□ -2.28
COL18A1P39060 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.8□□□□□ -2.28
COL18A1P39060 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.8□□□□□ -2.28
COL18A1P39060 MTCO2P3-201ENST00000442543 421 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC132479.1-201ENST00000449160 144 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 RNU6-1037P-201ENST00000459571 107 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 HMGN2P9-201ENST00000476875 229 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.8□□□□□ -2.28
COL18A1P39060 AC011406.1-201ENST00000512440 370 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 RNU2-34P-201ENST00000516534 121 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 RNU6-229P-201ENST00000516614 102 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC009094.1-201ENST00000564443 426 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AP003465.2-201ENST00000602571 373 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AC064872.1-201ENST00000604823 1072 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 U2.17-201ENST00000611454 95 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AL050303.3-201ENST00000613704 284 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 AL390237.1-201ENST00000404226 1415 ntBASIC0.8□□□□□ -2.28
COL18A1P39060 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
COL18A1P39060 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.79□□□□□ -2.28
COL18A1P39060 AC060773.1-201ENST00000421698 310 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.79□□□□□ -2.28
COL18A1P39060 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.79□□□□□ -2.28
COL18A1P39060 RPS26P45-201ENST00000471748 340 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.79□□□□□ -2.28
COL18A1P39060 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.79□□□□□ -2.28
COL18A1P39060 SNORA18.6-201ENST00000516792 115 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 RNA5SP437-201ENST00000517249 129 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.79□□□□□ -2.28
COL18A1P39060 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.79□□□□□ -2.28
COL18A1P39060 AC012414.6-201ENST00000568241 401 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 MIR3915-201ENST00000578518 97 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 MIR4753-201ENST00000585119 83 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 HSPE1P19-201ENST00000603327 295 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 AC104458.1-201ENST00000608243 463 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 AC243829.6-201ENST00000612652 106 ntBASIC0.79□□□□□ -2.28
COL18A1P39060 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.79□□□□□ -2.28
COL18A1P39060 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
COL18A1P39060 RNU6-1120P-201ENST00000362988 108 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 RNU6-266P-201ENST00000364225 107 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 SNORA29-201ENST00000384183 140 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 Y_RNA.518-201ENST00000384552 113 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 RNU6-903P-201ENST00000391270 109 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 MRPL35P1-201ENST00000404272 572 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 CDK8P2-201ENST00000415020 547 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 MRPL35P3-201ENST00000421557 364 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 MTND5P15-201ENST00000434246 349 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 RNU7-167P-201ENST00000459160 62 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 RNU6-85P-201ENST00000605989 107 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.78□□□□□ -2.28
COL18A1P39060 AC126177.8-201ENST00000618339 1015 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 AC007494.3-201ENST00000624660 743 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.78□□□□□ -2.28
COL18A1P39060 AC099654.5-201ENST00000636479 350 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 AC073544.1-201ENST00000600110 1595 ntBASIC0.78□□□□□ -2.28
COL18A1P39060 RNU6-553P-201ENST00000364047 96 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 SNORA72.2-201ENST00000365028 127 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 RNU6-517P-201ENST00000384362 110 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 RNY3P10-201ENST00000384764 102 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 AL117342.1-201ENST00000404861 406 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 MIR1283-1-201ENST00000408494 87 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.78□□□□□ -2.29
COL18A1P39060 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.78□□□□□ -2.29
COL18A1P39060 USP9YP28-201ENST00000435142 589 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.78□□□□□ -2.29
COL18A1P39060 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.78□□□□□ -2.29
COL18A1P39060 AL163973.1-201ENST00000484753 577 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
COL18A1P39060 RNU6-856P-201ENST00000516959 98 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 AP002963.1-201ENST00000530590 184 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 AL137161.1-201ENST00000532231 390 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 AC019288.1-201ENST00000557918 224 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.78□□□□□ -2.29
COL18A1P39060 AL353149.1-201ENST00000610667 244 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 MIR338-201ENST00000636369 67 ntBASIC0.78□□□□□ -2.29
COL18A1P39060 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.78□□□□□ -2.29
COL18A1P39060 BX322639.1-202ENST00000423987 2213 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
COL18A1P39060 MTND2P18-201ENST00000419962 1030 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.77□□□□□ -2.29
COL18A1P39060 AC133104.1-201ENST00000429100 218 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.77□□□□□ -2.29
COL18A1P39060 PGBD4P5-201ENST00000445958 426 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 AL133217.1-201ENST00000450980 425 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 RPS20P10-201ENST00000451209 253 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 AC010486.2-201ENST00000505572 483 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 AL136370.1-201ENST00000608166 691 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 TCL6_2.1-201ENST00000615162 119 ntBASIC0.77□□□□□ -2.29
COL18A1P39060 MT-TH-201ENST00000387441 69 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms