Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXC9P31274 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXC9P31274 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXC9P31274 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXC9P31274 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXC9P31274 PCGEM1.1-201ENST00000613431 131 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 AC126177.8-201ENST00000618339 1015 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 FO624990.1-201ENST00000636373 85 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXC9P31274 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXC9P31274 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXC9P31274 Y_RNA.61-201ENST00000362835 102 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 RNU6-797P-201ENST00000363101 109 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 U3.9-201ENST00000363823 204 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 RNU6-743P-201ENST00000364151 106 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 Y_RNA.405-201ENST00000383979 100 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 RNU1-52P-201ENST00000384190 164 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 Y_RNA.451-201ENST00000384200 100 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 Y_RNA.509-201ENST00000384506 99 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 Y_RNA.524-201ENST00000384564 100 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 Y_RNA.561-201ENST00000384694 100 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 MIR95-201ENST00000385072 81 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 SNORA75.6-201ENST00000391318 127 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 RNA5SP247-201ENST00000411181 105 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 RNU2-32P-201ENST00000411193 191 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 Z82209.1-201ENST00000422141 2135 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 WARS2P1-201ENST00000429678 537 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 AL445305.1-201ENST00000432577 575 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 OR2AQ1P-201ENST00000451972 200 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXC9P31274 snoU13.30-201ENST00000458951 104 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 AC022493.2-201ENST00000506122 481 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.31□□□□□ -2.04
HOXC9P31274 SNORA48.11-201ENST00000517015 89 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXC9P31274 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXC9P31274 AC090517.1-201ENST00000569307 266 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXC9P31274 AP000553.5-201ENST00000641933 54 ntBASIC2.31□□□□□ -2.04
HOXC9P31274 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXC9P31274 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
HOXC9P31274 RNU6-546P-201ENST00000383991 107 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 MIR524-201ENST00000385242 87 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 SNORA67.5-201ENST00000391036 107 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXC9P31274 MIR2053-201ENST00000459295 91 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXC9P31274 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.3□□□□□ -2.04
HOXC9P31274 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXC9P31274 RNU7-175P-201ENST00000515915 61 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 SNORA31.11-201ENST00000516528 139 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 CBX3P4-201ENST00000538909 354 ntBASIC2.3□□□□□ -2.04
HOXC9P31274 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
HOXC9P31274 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.29□□□□□ -2.04
HOXC9P31274 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HOXC9P31274 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HOXC9P31274 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HOXC9P31274 Y_RNA.419-201ENST00000384041 102 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 RNU6-700P-201ENST00000391043 107 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXC9P31274 AC092423.1-201ENST00000430165 186 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 AC009238.1-201ENST00000442165 424 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 AC009237.6-201ENST00000446969 424 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 AC068781.1-201ENST00000488231 618 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXC9P31274 RNU6-264P-201ENST00000517134 104 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 EIF4A1P12-201ENST00000551910 141 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 AL355802.3-201ENST00000607571 545 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.29□□□□□ -2.04
HOXC9P31274 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HOXC9P31274 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXC9P31274 AC131280.1-202ENST00000624067 4211 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC9P31274 RNU6-99P-201ENST00000364721 107 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 RNA5SP138-201ENST00000365098 114 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 RNU6-541P-201ENST00000384709 110 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 MIR561-201ENST00000385216 97 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXC9P31274 SNORA12.2-201ENST00000391040 156 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 ELOCP24-201ENST00000456370 334 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC9P31274 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 HMGB3P3-201ENST00000510526 400 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AC093303.1-201ENST00000514549 295 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 Y_RNA.706-201ENST00000516933 99 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXC9P31274 MIR4419B-201ENST00000577260 68 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AC016727.2-201ENST00000603988 621 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AC080078.3-201ENST00000605407 463 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 MIR502-201ENST00000606349 86 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AL133255.1-201ENST00000606374 441 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AC005520.5-201ENST00000613926 164 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 AC137590.2-201ENST00000619709 240 ntBASIC2.28□□□□□ -2.04
HOXC9P31274 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC9P31274 SNORD32B-201ENST00000364460 84 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 SNORA51.11-201ENST00000384442 131 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 MIR153-2-201ENST00000385225 87 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 Y_RNA.579-201ENST00000390939 94 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms