Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
ERCC3P19447 AL365361.1-201ENST00000566942 3481 ntBASIC3.74□□□□□ -1.81
ERCC3P19447 AC092593.1-201ENST00000515413 1815 ntBASIC3.74□□□□□ -1.81
ERCC3P19447 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ERCC3P19447 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.74□□□□□ -1.81
ERCC3P19447 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
ERCC3P19447 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ERCC3P19447 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ERCC3P19447 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
ERCC3P19447 Y_RNA.14-201ENST00000362415 103 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 SNORA80A-201ENST00000363922 136 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 RNU6-324P-201ENST00000363957 106 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 RNA5SP125-201ENST00000364843 120 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 SNORA51.4-201ENST00000364993 124 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
ERCC3P19447 RNU6-1264P-201ENST00000383891 107 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 Y_RNA.489-201ENST00000384410 101 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.73□□□□□ -1.81
ERCC3P19447 POLR2KP2-201ENST00000438155 177 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 AC074290.1-201ENST00000448883 135 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.73□□□□□ -1.81
ERCC3P19447 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.73□□□□□ -1.81
ERCC3P19447 AC008749.1-201ENST00000597650 306 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 MIR1248-201ENST00000629190 106 ntBASIC3.73□□□□□ -1.81
ERCC3P19447 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ERCC3P19447 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
ERCC3P19447 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.72□□□□□ -1.81
ERCC3P19447 SNORD81.1-201ENST00000363064 77 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 RNU6-290P-201ENST00000365212 101 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 Y_RNA.447-201ENST00000384184 113 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 SNORA44-201ENST00000384584 132 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 MIR1283-1-201ENST00000408494 87 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 RNA5SP504-201ENST00000410676 117 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.72□□□□□ -1.81
ERCC3P19447 AC005042.3-201ENST00000453230 174 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 HSPE1P25-201ENST00000455484 251 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 HMGB3P17-201ENST00000504195 649 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 ATP5EP1-201ENST00000510257 156 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 RNA5SP385-201ENST00000515947 110 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 RNA5SP490-201ENST00000517141 136 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 AC022616.8-201ENST00000533569 253 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 AC022080.3-201ENST00000544433 482 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.72□□□□□ -1.81
ERCC3P19447 MIR4298-201ENST00000584380 73 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.72□□□□□ -1.81
ERCC3P19447 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 AC025754.2-201ENST00000606491 432 ntBASIC3.72□□□□□ -1.81
ERCC3P19447 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
ERCC3P19447 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.72□□□□□ -1.81
ERCC3P19447 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.72□□□□□ -1.81
ERCC3P19447 Z82209.1-201ENST00000422141 2135 ntBASIC3.71□□□□□ -1.81
ERCC3P19447 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
ERCC3P19447 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ERCC3P19447 Y_RNA.101-201ENST00000363154 102 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 Y_RNA.500-201ENST00000384466 111 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 Y_RNA.569-201ENST00000384749 103 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 MIR561-201ENST00000385216 97 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 MIR300-201ENST00000401138 83 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 AL357139.1-201ENST00000407792 426 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 EEF1B2P7-201ENST00000451177 676 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 RPL23AP67-201ENST00000465341 474 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 AC114982.1-201ENST00000469402 321 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 UBE2DNL-203ENST00000474922 222 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 SRIP1-201ENST00000489235 288 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.71□□□□□ -1.82
ERCC3P19447 RPL23AP94-201ENST00000512518 302 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.71□□□□□ -1.82
ERCC3P19447 MIR2682-201ENST00000580305 110 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 MIR3128-201ENST00000581957 66 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 AC012433.1-201ENST00000588916 398 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 AL033523.1-201ENST00000605153 153 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 AP001282.2-201ENST00000616149 309 ntBASIC3.71□□□□□ -1.82
ERCC3P19447 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.71□□□□□ -1.82
ERCC3P19447 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ERCC3P19447 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.7□□□□□ -1.82
ERCC3P19447 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ERCC3P19447 Y_RNA.446-201ENST00000384178 104 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 RNU6-514P-201ENST00000384208 107 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 MIR548B-201ENST00000385247 97 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 MIR887-201ENST00000401258 79 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.7□□□□□ -1.82
ERCC3P19447 RPS4XP2-201ENST00000458402 793 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 Y_RNA.673-201ENST00000516306 88 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 AC107934.2-201ENST00000518653 310 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.7□□□□□ -1.82
ERCC3P19447 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 uc_338.1-201ENST00000612113 180 ntBASIC3.7□□□□□ -1.82
ERCC3P19447 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
ERCC3P19447 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ERCC3P19447 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.7□□□□□ -1.82
ERCC3P19447 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
ERCC3P19447 AC000403.1-201ENST00000613696 3585 ntBASIC3.69□□□□□ -1.82
ERCC3P19447 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.69□□□□□ -1.82
ERCC3P19447 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ERCC3P19447 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ERCC3P19447 RNA5SP383-201ENST00000362934 120 ntBASIC3.69□□□□□ -1.82
ERCC3P19447 U3.8-201ENST00000363675 217 ntBASIC3.69□□□□□ -1.82
ERCC3P19447 SNORD27-201ENST00000363981 72 ntBASIC3.69□□□□□ -1.82
ERCC3P19447 SNORA20.1-201ENST00000364790 130 ntBASIC3.69□□□□□ -1.82
ERCC3P19447 SNORD14D-201ENST00000384390 87 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms