Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 U2.9-201ENST00000615427 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.11-201ENST00000616345 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.2-201ENST00000616535 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.3-201ENST00000617785 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.19-201ENST00000618602 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU2-1-201ENST00000618664 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.6-201ENST00000619225 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.5-201ENST00000619465 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.10-201ENST00000620268 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG1P18858 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG1P18858 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIG1P18858 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIG1P18858 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIG1P18858 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.81□□□□□ -1.8
LIG1P18858 RNU1-70P-201ENST00000362618 164 ntBASIC3.81□□□□□ -1.8
LIG1P18858 RNU6-727P-201ENST00000363592 107 ntBASIC3.81□□□□□ -1.8
LIG1P18858 Y_RNA.488-201ENST00000384403 102 ntBASIC3.81□□□□□ -1.8
LIG1P18858 RNU6-748P-201ENST00000384648 107 ntBASIC3.81□□□□□ -1.8
LIG1P18858 RNU6-131P-201ENST00000391144 107 ntBASIC3.81□□□□□ -1.8
LIG1P18858 AC023141.4-201ENST00000412031 328 ntBASIC3.81□□□□□ -1.8
LIG1P18858 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.81□□□□□ -1.8
LIG1P18858 AC245291.1-201ENST00000419501 328 ntBASIC3.81□□□□□ -1.8
LIG1P18858 PTGES3P4-201ENST00000426243 356 ntBASIC3.81□□□□□ -1.8
LIG1P18858 AL162725.1-201ENST00000435405 301 ntBASIC3.81□□□□□ -1.8
LIG1P18858 RN7SL601P-201ENST00000471221 293 ntBASIC3.81□□□□□ -1.8
LIG1P18858 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.81□□□□□ -1.8
LIG1P18858 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.81□□□□□ -1.8
LIG1P18858 AL356274.2-201ENST00000624379 3752 ntBASIC3.81□□□□□ -1.8
LIG1P18858 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.8□□□□□ -1.8
LIG1P18858 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.8□□□□□ -1.8
LIG1P18858 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
LIG1P18858 MIR148B-201ENST00000362252 99 ntBASIC3.8□□□□□ -1.8
LIG1P18858 SNORD46.1-201ENST00000364139 104 ntBASIC3.8□□□□□ -1.8
LIG1P18858 RNU6-454P-201ENST00000364292 107 ntBASIC3.8□□□□□ -1.8
LIG1P18858 Y_RNA.357-201ENST00000365487 109 ntBASIC3.8□□□□□ -1.8
LIG1P18858 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.8□□□□□ -1.8
LIG1P18858 U3.40-201ENST00000408706 208 ntBASIC3.8□□□□□ -1.8
LIG1P18858 RNA5SP201-201ENST00000410316 124 ntBASIC3.8□□□□□ -1.8
LIG1P18858 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.8□□□□□ -1.8
LIG1P18858 RNA5SP385-201ENST00000515947 110 ntBASIC3.8□□□□□ -1.8
LIG1P18858 RNU6-56P-201ENST00000516986 93 ntBASIC3.8□□□□□ -1.8
LIG1P18858 AC068657.1-201ENST00000520807 306 ntBASIC3.8□□□□□ -1.8
LIG1P18858 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.8□□□□□ -1.8
LIG1P18858 MIR4506-201ENST00000584693 77 ntBASIC3.8□□□□□ -1.8
LIG1P18858 AC091152.3-201ENST00000604227 325 ntBASIC3.8□□□□□ -1.8
LIG1P18858 AL034555.1-201ENST00000604816 211 ntBASIC3.8□□□□□ -1.8
LIG1P18858 PCGEM1.1-201ENST00000613431 131 ntBASIC3.8□□□□□ -1.8
LIG1P18858 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIG1P18858 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
LIG1P18858 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
LIG1P18858 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LIG1P18858 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
LIG1P18858 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.79□□□□□ -1.8
LIG1P18858 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.79□□□□□ -1.8
LIG1P18858 MIR208A-201ENST00000362287 71 ntBASIC3.79□□□□□ -1.8
LIG1P18858 RNU6-1010P-201ENST00000362757 107 ntBASIC3.79□□□□□ -1.8
LIG1P18858 Y_RNA.182-201ENST00000363880 111 ntBASIC3.79□□□□□ -1.8
LIG1P18858 RNA5SP387-201ENST00000364226 106 ntBASIC3.79□□□□□ -1.8
LIG1P18858 RNU6-19P-201ENST00000384718 107 ntBASIC3.79□□□□□ -1.8
LIG1P18858 RNVU1-14-201ENST00000384770 164 ntBASIC3.79□□□□□ -1.8
LIG1P18858 MIR23A-201ENST00000385245 73 ntBASIC3.79□□□□□ -1.8
LIG1P18858 AC009969.1-201ENST00000438726 172 ntBASIC3.79□□□□□ -1.8
LIG1P18858 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.79□□□□□ -1.8
LIG1P18858 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.79□□□□□ -1.8
LIG1P18858 snoU13.28-201ENST00000459235 104 ntBASIC3.79□□□□□ -1.8
LIG1P18858 snoU13.14-201ENST00000459372 104 ntBASIC3.79□□□□□ -1.8
LIG1P18858 AC107626.1-201ENST00000471084 183 ntBASIC3.79□□□□□ -1.8
LIG1P18858 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.79□□□□□ -1.8
LIG1P18858 RNU6-344P-201ENST00000516635 111 ntBASIC3.79□□□□□ -1.8
LIG1P18858 IGKV2-26-201ENST00000518305 343 ntBASIC3.79□□□□□ -1.8
LIG1P18858 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.79□□□□□ -1.8
LIG1P18858 AC100767.1-201ENST00000528178 123 ntBASIC3.79□□□□□ -1.8
LIG1P18858 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.79□□□□□ -1.8
LIG1P18858 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
LIG1P18858 AC073476.4-201ENST00000628409 72 ntBASIC3.79□□□□□ -1.8
LIG1P18858 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.79□□□□□ -1.8
LIG1P18858 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIG1P18858 Y_RNA.215-201ENST00000364204 112 ntBASIC3.78□□□□□ -1.8
LIG1P18858 RNU6-275P-201ENST00000364910 107 ntBASIC3.78□□□□□ -1.8
LIG1P18858 SNORD21-201ENST00000383953 95 ntBASIC3.78□□□□□ -1.8
LIG1P18858 Y_RNA.415-201ENST00000384012 112 ntBASIC3.78□□□□□ -1.8
LIG1P18858 RNU6-198P-201ENST00000384258 104 ntBASIC3.78□□□□□ -1.8
LIG1P18858 RNU6-763P-201ENST00000390865 106 ntBASIC3.78□□□□□ -1.8
LIG1P18858 RN7SKP220-201ENST00000410611 288 ntBASIC3.78□□□□□ -1.8
LIG1P18858 SEPT7P4-201ENST00000437076 306 ntBASIC3.78□□□□□ -1.8
LIG1P18858 AL714022.1-201ENST00000439897 151 ntBASIC3.78□□□□□ -1.8
LIG1P18858 AC008155.2-201ENST00000464337 397 ntBASIC3.78□□□□□ -1.8
LIG1P18858 AC091153.1-201ENST00000466297 402 ntBASIC3.78□□□□□ -1.8
LIG1P18858 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.78□□□□□ -1.8
LIG1P18858 AC136628.3-201ENST00000521868 290 ntBASIC3.78□□□□□ -1.8
LIG1P18858 RPS15AP11-201ENST00000594193 385 ntBASIC3.78□□□□□ -1.8
LIG1P18858 MIR7975-201ENST00000619350 68 ntBASIC3.78□□□□□ -1.8
LIG1P18858 AC110079.1-202ENST00000635213 138 ntBASIC3.78□□□□□ -1.8
LIG1P18858 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LIG1P18858 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.78□□□□□ -1.8
LIG1P18858 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIG1P18858 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
LIG1P18858 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms