Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 RNU7-90P-201ENST00000459216 62 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 HMGB1P29-201ENST00000505659 499 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 RNA5SP436-201ENST00000516020 115 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 Y_RNA.670-201ENST00000516255 105 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 SCARNA24.1-201ENST00000516465 137 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AC106038.2-201ENST00000520706 568 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AC007834.2-201ENST00000536310 343 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AL162424.1-201ENST00000602325 221 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AC018714.1-201ENST00000605028 208 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AC009159.2-201ENST00000617603 606 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AC022418.1-201ENST00000624118 445 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 AC008133.2-201ENST00000624540 351 ntBASIC0.29□□□□□ -2.36
TRAV3A0A0B4J244 RNU4-48P-201ENST00000365559 182 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 Y_RNA.540-201ENST00000384638 111 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 RNU6-440P-201ENST00000390882 105 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 MRPL42P3-201ENST00000401492 326 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC090960.1-201ENST00000421072 306 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC244023.1-201ENST00000426884 112 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AL606662.1-201ENST00000445763 553 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC009237.7-201ENST00000447357 229 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AL049830.1-201ENST00000468034 425 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC079382.1-201ENST00000493346 557 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 RNU6-1069P-201ENST00000516612 133 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 RNU7-128P-201ENST00000517247 62 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC090572.1-201ENST00000519251 160 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 MIR1273G-201ENST00000577677 100 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 MTND1P15-201ENST00000579262 949 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC146944.4-201ENST00000602697 718 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC242498.1-201ENST00000604134 111 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC012557.2-201ENST00000605919 418 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC243994.1-201ENST00000618627 109 ntBASIC0.28□□□□□ -2.36
TRAV3A0A0B4J244 AC134026.1-201ENST00000623249 2239 ntBASIC0.28□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-199P-201ENST00000362954 107 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 SNORA67.2-201ENST00000384300 149 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 SNORD116-13-201ENST00000384408 92 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 MIR7-2-201ENST00000384970 110 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 MIR549A-201ENST00000385268 96 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 SNORA75.2-201ENST00000391138 150 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-1093P-201ENST00000391194 107 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 SNORA75.3-201ENST00000391231 150 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AL034345.1-201ENST00000407768 123 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 MTCO2P23-201ENST00000425216 680 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC022364.2-201ENST00000457963 554 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-917P-201ENST00000516294 104 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-1178P-201ENST00000516674 107 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 RNU1-142P-201ENST00000516682 145 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC005730.3-201ENST00000583067 366 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 MIR4999-201ENST00000585029 91 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC112191.3-201ENST00000604371 277 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC004832.4-201ENST00000608952 331 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AC091304.9-201ENST00000612091 226 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AL359075.3-201ENST00000613288 217 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AL078595.3-201ENST00000623815 1166 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 AL603839.4-201ENST00000624658 1005 ntBASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.27□□□□□ -2.37
TRAV3A0A0B4J244 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RNU5F-6P-201ENST00000362979 116 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 SNORA2.2-201ENST00000365473 135 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-827P-201ENST00000365553 106 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-945P-201ENST00000383947 107 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-1200P-201ENST00000384162 107 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 SNORA16.2-201ENST00000390991 127 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RNA5SP323-201ENST00000391094 133 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RPEP5-201ENST00000441137 268 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC007215.1-201ENST00000464893 276 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AK3P2-201ENST00000507976 429 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RN7SKP12-201ENST00000516275 143 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 Y_RNA.672-201ENST00000516289 104 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 RNU6-1220P-201ENST00000517126 108 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC025647.1-201ENST00000517879 253 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC103996.1-201ENST00000555468 102 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 MIR4775-201ENST00000581168 75 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC025627.3-201ENST00000582078 182 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AP000811.1-201ENST00000603803 651 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC106754.2-201ENST00000623006 233 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AC008873.1-201ENST00000625051 138 ntBASIC0.26□□□□□ -2.37
TRAV3A0A0B4J244 AL451046.2-201ENST00000403074 277 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 AC004866.1-201ENST00000411748 78 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 AL354692.1-201ENST00000423044 315 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 AC245047.3-201ENST00000429428 127 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 AC005534.2-201ENST00000431047 433 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 AC233266.1-201ENST00000454518 96 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 AC245047.8-201ENST00000456455 284 ntBASIC0.25□□□□□ -2.37
TRAV3A0A0B4J244 U7.7-201ENST00000459276 60 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms