Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PTP4A1P4-201ENST00000512479 322 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC016957.1-201ENST00000534895 309 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC104260.1-201ENST00000616660 539 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 SCARNA4-201ENST00000629045 128 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.135-201ENST00000363439 95 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 SNORA46.1-201ENST00000391069 153 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 MTCYBP2-201ENST00000407745 171 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU7-187P-201ENST00000458985 68 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC082651.2-201ENST00000496833 166 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 FAM206BP-201ENST00000510179 541 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-1314P-201ENST00000517139 104 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU2-19P-201ENST00000517288 84 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC090821.2-201ENST00000523552 176 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC084364.2-201ENST00000546924 395 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 MIR4529-201ENST00000578110 78 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 FAM106DP-201ENST00000586416 501 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 SNRPGP17-201ENST00000603780 214 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC113139.1-201ENST00000605049 239 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AF250324.2-201ENST00000608299 610 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 HMGB1P24-202ENST00000615653 685 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 SNORD98-201ENST00000636377 67 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-562P-201ENST00000362731 107 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-336P-201ENST00000364891 107 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.339-201ENST00000365325 102 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-483P-201ENST00000384088 108 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.490-201ENST00000384413 102 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 MTND3P9-201ENST00000429526 346 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AL133396.1-201ENST00000432048 687 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 SNRPGP13-201ENST00000442212 177 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC096745.1-201ENST00000509945 370 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU2-53P-201ENST00000516257 147 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-358P-201ENST00000516564 75 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-586P-201ENST00000517265 104 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC009127.3-201ENST00000570531 403 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 MIR4742-201ENST00000581069 85 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC007229.1-201ENST00000590455 412 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RPL30P11-203ENST00000598995 310 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC025165.5-201ENST00000602802 578 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC002553.4-201ENST00000616896 331 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC006504.8-201ENST00000621046 635 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 AC090617.10-201ENST00000624308 134 ntBASIC1.2□□□□□ -2.22
SHANK1Q9Y566 RNU6-845P-201ENST00000362578 103 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 MIR514A2-201ENST00000385131 88 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 MIR514A3-201ENST00000385132 88 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.597-201ENST00000410463 100 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AL139396.1-201ENST00000421137 167 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.19□□□□□ -2.22
SHANK1Q9Y566 RPL39P29-201ENST00000447779 157 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AL121769.1-201ENST00000469473 401 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 RPS27P21-201ENST00000486977 252 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AC069439.1-201ENST00000494739 167 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.19□□□□□ -2.22
SHANK1Q9Y566 RPL39P5-202ENST00000512505 151 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AC016256.1-201ENST00000547971 354 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AC090517.1-201ENST00000569307 266 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.19□□□□□ -2.22
SHANK1Q9Y566 AL136221.1-201ENST00000621449 509 ntBASIC1.19□□□□□ -2.22
SHANK1Q9Y566 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SHANK1Q9Y566 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SHANK1Q9Y566 RNU5B-2P-201ENST00000363036 113 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNU5F-3P-201ENST00000363767 117 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.301-201ENST00000364990 103 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 SNORA72.2-201ENST00000365028 127 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNU4-20P-201ENST00000365601 151 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNU6-546P-201ENST00000383991 107 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AL033519.2-201ENST00000403958 392 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RPS20P15-201ENST00000412792 311 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK1Q9Y566 MTND2P29-201ENST00000438595 412 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AC069257.2-201ENST00000441819 155 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNU6-1198P-201ENST00000516904 67 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AC115990.1-201ENST00000526957 301 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK1Q9Y566 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.18□□□□□ -2.22
SHANK1Q9Y566 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AC090517.3-201ENST00000625170 141 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 AL450472.1-202ENST00000637286 180 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 MTND4P5-201ENST00000435821 1374 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNU6-1329P-201ENST00000365664 107 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.390-201ENST00000383932 102 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.530-201ENST00000384587 101 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNY1P4-201ENST00000384595 115 ntBASIC1.18□□□□□ -2.22
SHANK1Q9Y566 RNU2-48P-201ENST00000410694 191 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms