Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU1-62P-201ENST00000362599 164 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1309P-201ENST00000363305 108 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.149-201ENST00000363558 117 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.471-201ENST00000384312 102 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 MIR218-1-201ENST00000384999 110 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 MIR487A-201ENST00000385009 80 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 MIR634-201ENST00000385208 97 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 FO393413.1-201ENST00000402892 195 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 AC023141.11-201ENST00000508864 202 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1143P-201ENST00000516125 104 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 SNORA25.14-201ENST00000516481 132 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 AC131281.1-201ENST00000522984 164 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 AC010999.1-201ENST00000611856 324 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 AC090517.3-201ENST00000625170 141 ntBASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
LIMCH1Q9UPQ0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-873P-201ENST00000363833 107 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-708P-201ENST00000384217 107 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 CBX3P6-201ENST00000430257 527 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 CYP2C59P-201ENST00000457790 269 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 MRPS35P2-201ENST00000508242 191 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-1012P-201ENST00000516606 109 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-586P-201ENST00000517265 104 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 AC008269.2-201ENST00000561915 1105 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 AC125232.2-201ENST00000592457 143 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 Y_RNA.772-201ENST00000606692 102 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 AC005562.2-201ENST00000618264 111 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 U6.92-201ENST00000636464 89 ntBASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
LIMCH1Q9UPQ0 RNU6-859P-201ENST00000362728 107 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.144-201ENST00000363521 113 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.179-201ENST00000363844 90 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 RNA5SP456-201ENST00000364002 114 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-1145P-201ENST00000384246 107 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-611P-201ENST00000384276 104 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-318P-201ENST00000384283 103 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-463P-201ENST00000384340 107 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 MIR329-1-201ENST00000385028 80 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 AL513477.1-202ENST00000417061 214 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 SNORD109B-201ENST00000458961 67 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 SNORD109A-201ENST00000459128 67 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 AC067942.3-201ENST00000512025 362 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 MTCO2P24-201ENST00000515611 426 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 HSPE1P18-201ENST00000517602 280 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 AL713866.2-201ENST00000603579 219 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 TCL6_2.1-201ENST00000615162 119 ntBASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.96□□□□□ -1.94
LIMCH1Q9UPQ0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RNU1-72P-201ENST00000362976 153 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.183-201ENST00000363882 113 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.210-201ENST00000364161 110 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 SNORD32B-201ENST00000364460 84 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RNA5SP240-201ENST00000365355 128 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-793P-201ENST00000384233 104 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.458-201ENST00000384240 102 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-1109P-201ENST00000391187 107 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 MRPL35P1-201ENST00000404272 572 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 MIR1302-3-201ENST00000408128 138 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RNA5SP181-201ENST00000410246 98 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.595-201ENST00000410403 105 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 SNORD12B-201ENST00000410433 91 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RPEP5-201ENST00000441137 268 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC007395.1-201ENST00000451333 677 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 MTATP8P1-201ENST00000467115 207 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC010655.3-201ENST00000478818 450 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC010469.2-201ENST00000496412 480 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.683-201ENST00000516508 93 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-635P-201ENST00000516651 102 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 SNORA40.15-201ENST00000516884 107 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC090517.1-201ENST00000569307 266 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AL449363.1-201ENST00000617815 186 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC006386.2-201ENST00000624491 75 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 AC012005.1-201ENST00000624575 75 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 Z82209.1-201ENST00000422141 2135 ntBASIC2.95□□□□□ -1.94
LIMCH1Q9UPQ0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.439-201ENST00000384119 94 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.574-201ENST00000384766 95 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.597-201ENST00000410463 100 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 MTCYBP9-201ENST00000431021 303 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 EEF1B2P7-201ENST00000451177 676 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 MIR4659A-201ENST00000580269 81 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 AC240442.1-201ENST00000616055 283 ntBASIC2.94□□□□□ -1.94
LIMCH1Q9UPQ0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms