Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AL049779.4-201ENST00000604500 156 ntBASIC2.37□□□□□ -2.03
SIX4Q9UIU6 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.37□□□□□ -2.03
SIX4Q9UIU6 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SIX4Q9UIU6 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
SIX4Q9UIU6 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
SIX4Q9UIU6 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
SIX4Q9UIU6 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.37□□□□□ -2.03
SIX4Q9UIU6 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 snoU2_19.1-201ENST00000362361 80 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 RNU1-91P-201ENST00000364746 163 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AC117470.1-201ENST00000381974 330 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 SNORA69.1-201ENST00000390904 137 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 Y_RNA.592-201ENST00000410274 109 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 RPL30P4-201ENST00000429309 333 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AL445305.1-201ENST00000432577 575 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 HMGN1P10-201ENST00000474557 553 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 TRBV12-1-201ENST00000479785 344 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 RPL22P13-201ENST00000493291 347 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 RNA5SP112-201ENST00000515937 99 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 GNAI2P1-201ENST00000541815 315 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AC027288.2-201ENST00000553028 243 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 HSBP1P1-201ENST00000555205 166 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 MIR3945-201ENST00000581853 98 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 MIR5194-201ENST00000582634 120 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 MIR3136-201ENST00000583498 78 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AC104695.3-201ENST00000604052 296 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AL132822.1-201ENST00000617063 513 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 AL449363.1-201ENST00000617815 186 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 U2.1-201ENST00000618978 145 ntBASIC2.36□□□□□ -2.03
SIX4Q9UIU6 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
SIX4Q9UIU6 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
SIX4Q9UIU6 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.35□□□□□ -2.03
SIX4Q9UIU6 MTND5P16-201ENST00000460269 1703 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
SIX4Q9UIU6 RNU1-72P-201ENST00000362976 153 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 RNU6-450P-201ENST00000364654 107 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 SNORA67.1-201ENST00000364749 141 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 MIR153-2-201ENST00000385225 87 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 RNA5SP425-201ENST00000410336 112 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 AL135786.1-201ENST00000415892 214 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.35□□□□□ -2.03
SIX4Q9UIU6 AP000870.1-201ENST00000472927 406 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 RNU6-475P-201ENST00000516073 104 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 RNA5SP200-201ENST00000516360 103 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 RNU6-1046P-201ENST00000516538 107 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 AC144568.1-201ENST00000520139 137 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 AC023442.1-201ENST00000531247 422 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.35□□□□□ -2.03
SIX4Q9UIU6 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.35□□□□□ -2.03
SIX4Q9UIU6 AL162373.1-201ENST00000620433 407 ntBASIC2.35□□□□□ -2.03
SIX4Q9UIU6 OR56A5-201ENST00000340110 738 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 RNU4-15P-201ENST00000362613 141 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 RNU6-486P-201ENST00000363116 107 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 Y_RNA.319-201ENST00000365138 92 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 RNU6-708P-201ENST00000384217 107 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 Y_RNA.557-201ENST00000384680 107 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 MIR218-1-201ENST00000384999 110 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 MIR549A-201ENST00000385268 96 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
SIX4Q9UIU6 AL023284.1-201ENST00000403956 276 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 USP9YP16-201ENST00000430287 407 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.34□□□□□ -2.03
SIX4Q9UIU6 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.34□□□□□ -2.03
SIX4Q9UIU6 USP9YP23-201ENST00000455085 407 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 AC140059.1-201ENST00000489238 361 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 RNU6-1045P-201ENST00000516321 107 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 SCARNA16.3-201ENST00000516595 184 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.34□□□□□ -2.03
SIX4Q9UIU6 CYP4A27P-201ENST00000567218 190 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 MIR3199-1-201ENST00000582434 88 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 AC008737.2-201ENST00000599446 118 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 AL356280.1-201ENST00000603614 379 ntBASIC2.34□□□□□ -2.03
SIX4Q9UIU6 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.33□□□□□ -2.04
SIX4Q9UIU6 AC080128.1-201ENST00000474389 1917 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 Y_RNA.145-201ENST00000363527 102 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 RNU4-56P-201ENST00000364700 142 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 RNU6-378P-201ENST00000384324 107 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 SNORA64-201ENST00000384674 134 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 MIR628-201ENST00000385229 95 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 MIR208B-201ENST00000401172 77 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 CBX3P9-201ENST00000402326 552 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 RNA5SP201-201ENST00000410316 124 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 RPS26P42-201ENST00000413485 326 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.33□□□□□ -2.04
SIX4Q9UIU6 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.33□□□□□ -2.04
SIX4Q9UIU6 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.33□□□□□ -2.04
SIX4Q9UIU6 AC096638.1-201ENST00000444678 216 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 AC011753.1-201ENST00000451001 220 ntBASIC2.33□□□□□ -2.04
SIX4Q9UIU6 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms