Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 SNORA31.16-201ENST00000516773 139 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC010928.2-201ENST00000588017 287 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 snoU13.31-201ENST00000607291 104 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 uc_338.14-201ENST00000613162 166 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 uc_338.22-201ENST00000622722 187 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 MTND5P10-201ENST00000603719 1809 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 RNU6-874P-201ENST00000362390 105 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.146-201ENST00000363549 102 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 RNU6-595P-201ENST00000363944 107 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 RNU6-457P-201ENST00000363999 107 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.197-201ENST00000364004 102 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 SNORA3A-201ENST00000364113 130 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.216-201ENST00000364205 93 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.463-201ENST00000384271 102 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 RNU6-308P-201ENST00000390957 107 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 SNORA26.3-201ENST00000391119 136 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 BTF3L4P2-201ENST00000392798 346 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 U3.40-201ENST00000408706 208 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 RN7SKP61-201ENST00000410642 295 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 HMGB3P2-201ENST00000411913 584 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 CYCSP48-201ENST00000417124 323 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AL358453.1-201ENST00000422522 250 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 PMCHL1-202ENST00000423102 261 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 MTCO2P12-201ENST00000427426 682 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AL137792.2-201ENST00000443484 235 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 SNORD13-201ENST00000459299 104 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 snoU13.14-201ENST00000459372 104 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC079804.2-201ENST00000490376 200 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC022493.2-201ENST00000506122 481 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC107393.1-201ENST00000512403 346 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 SCARNA11.3-201ENST00000517276 130 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 HSPE1P4-201ENST00000550617 308 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 MIR4255-201ENST00000579351 72 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 MIR4719-201ENST00000585233 84 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC084768.2-201ENST00000622736 221 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AC091925.1-201ENST00000623204 462 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 AP000553.5-201ENST00000641933 54 ntBASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
UPF3AQ9H1J1 RNU5B-2P-201ENST00000363036 113 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNA5SP138-201ENST00000365098 114 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1227P-201ENST00000383981 107 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 SNORA29-201ENST00000384183 140 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 MIR487A-201ENST00000385009 80 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AL627390.1-201ENST00000396055 340 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 SNORD23.1-201ENST00000408212 104 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1245P-201ENST00000411130 106 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AL021397.1-201ENST00000451806 248 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RPL36AP48-201ENST00000485521 314 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AC114801.2-201ENST00000503825 781 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNU5F-2P-201ENST00000516066 82 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNU6-250P-201ENST00000516958 103 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 RNU6-699P-201ENST00000517081 110 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 MIR5571-201ENST00000577998 113 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 MIR4273-201ENST00000582824 84 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 SNRPGP17-201ENST00000603780 214 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AL353621.2-201ENST00000605340 133 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AC090971.5-201ENST00000621102 293 ntBASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.09□□□□□ -2.07
UPF3AQ9H1J1 ZNF299P-201ENST00000406845 1804 ntBASIC2.09□□□□□ -2.08
UPF3AQ9H1J1 AL359854.1-201ENST00000614203 1594 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 U3.13-201ENST00000364804 214 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 RNU6-1286P-201ENST00000383871 107 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.504-201ENST00000384481 104 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 MIR186-201ENST00000384988 86 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 MIR1294-201ENST00000408503 142 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AC018865.2-201ENST00000423631 129 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 MTCO3P29-201ENST00000432119 779 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AC244670.1-201ENST00000436879 112 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AL121594.1-201ENST00000475906 575 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 RPL30P10-201ENST00000488148 337 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 RPL23AP75-201ENST00000491601 451 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 RPS29P11-201ENST00000496507 171 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms